CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRSF7
(
Spermophilus tridecemlineatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSTOG00000004389
T41584_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000003936
RRM
13
74
VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGXXXXX
Links
Other
RRM
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
46 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SRSF3
Otolemur garnettii
ENSOGAG00000000502
N
0.839
SRSF3
Myotis lucifugus
ENSMLUG00000010671
N
0.839
SRSF3
Choloepus hoffmanni
ENSCHOG00000002515
N
0.839
SRSF3
Erinaceus europaeus
ENSEEUG00000001119
N
0.839
amel4_ncbi_hmm63829
Apis mellifera
amel4_ncbi_hmm63829
I
0.727
amel4_ncbi_hmm65494
Apis mellifera
amel4_ncbi_hmm65494
I
0.727
estExt_fgenesh1_pm.C_10147
Daphnia pulex
estExt_fgenesh1_pm.C_10147
I
0.727
nasonia_NCBI_hmm78264
Nasonia vitripennis
nasonia_NCBI_hmm78264
I
0.727
SRSF3
Oryzias latipes
ENSORLG00000020054
I
0.727
SRSF3
Meleagris gallopavo
ENSMGAG00000002503
I
0.712
SRSF3
Microcebus murinus
ENSMICG00000004674
I
0.712
ENSLAFG00000018193
Loxodonta africana
ENSLAFG00000018193
I
0.712
Sfrs3
Rattus norvegicus
ENSRNOG00000000520
I
0.712
SRSF3
Sus scrofa
ENSSSCG00000001564
I
0.712
SFRS3
Gallus gallus
ENSGALG00000000533
I
0.712
SRSF3
Gorilla gorilla
ENSGGOG00000017186
I
0.712
SRSF3
Macaca mulatta
ENSMMUG00000014306
I
0.712
SRSF3
Pteropus vampyrus
ENSPVAG00000014621
I
0.712
SRSF3
Homo sapiens
ENSG00000112081
I
0.712
ENSPPYG00000016548
Pongo pygmaeus
ENSPPYG00000016548
I
0.712
SRSF3
Ochotona princeps
ENSOPRG00000006006
I
0.712
XR_022443.1
Pan troglodytes
ENSPTRG00000018106
I
0.712
SRSF3
Oryctolagus cuniculus
ENSOCUG00000006684
I
0.712
SRSF3
Oryzias latipes
ENSORLG00000000292
I
0.712
Srsf3
Mus musculus
ENSMUSG00000071172
I
0.712
SRSF3
Monodelphis domestica
ENSMODG00000013539
I
0.712
LOC100053336
Equus caballus
ENSECAG00000018741
I
0.712
srsf3
Xenopus tropicalis
ENSXETG00000001701
I
0.712
PHUM357390
Pediculus humanus
PHUM357390
I
0.712
Ame_R002060
Ailuropoda melanoleuca
Ame_R002060
I
0.712
SRSF3
Vicugna pacos
ENSVPAG00000005481
I
0.712
SRSF3
Tursiops truncatus
ENSTTRG00000013447
I
0.712
SRSF3
Tupaia belangeri
ENSTBEG00000012272
I
0.712
SFRS3
Taeniopygia guttata
ENSTGUG00000000928
I
0.712
SRSF3
Tetraodon nigroviridis
ENSTNIG00000001003
I
0.712
SRSF3
Anolis carolinensis
ENSACAG00000016637
I
0.712
SFRS3_BOVIN
Bos taurus
ENSBTAG00000040006
I
0.712
ENSDORG00000012283
Dipodomys ordii
ENSDORG00000012283
I
0.712
SRSF3
Spermophilus tridecemlineatus
ENSSTOG00000014280
I
0.712
SRSF3
Echinops telfairi
ENSETEG00000010117
I
0.712
srsf3b
Danio rerio
ENSDARG00000059360
I
0.712
srsf3a
Danio rerio
ENSDARG00000025397
I
0.712
Q9XSU6_CANFA
Canis familiaris
ENSCAFG00000001414
I
0.712
LOC100408013
Callithrix jacchus
ENSCJAG00000016062
I
0.712
SRSF3
Cavia porcellus
ENSCPOG00000003722
I
0.712
SRSF3
Felis catus
ENSFCAG00000001084
I
0.712