srsf3a (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000025397 T36110_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp1
M336_0.6 		Drosophila melanogaster Sequence logo not available AUCYNNA SELEX
Cook et al.(2011)
804_7664738.1 		0.727
Rbp1
M335_0.6 		Drosophila melanogaster Sequence logo not available DCADCUUUA SELEX
Cook et al.(2011)
804_7664738 		0.727
Rbp1-like
M121_0.6 		Drosophila melanogaster AUCADCR RNAcompete
Ray et al.(2013)
RNCMPT00127 		0.727
Rbp1
M056_0.6 		Drosophila melanogaster WCAACRR RNAcompete
Ray et al.(2013)
RNCMPT00058 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000034706 RRM 16 81
ENSDARP00000035207 RRM 16 81

Links

Other RRM family RBPs
Other Danio rerio RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF3 Oryzias latipes ENSORLG00000000292 I 0.985
SRSF3 Cavia porcellus ENSCPOG00000003722 I 0.970
ENSPPYG00000016548 Pongo pygmaeus ENSPPYG00000016548 I 0.970
SRSF3 Ochotona princeps ENSOPRG00000006006 I 0.970
Q9XSU6_CANFA Canis familiaris ENSCAFG00000001414 I 0.970
SRSF3 Oryctolagus cuniculus ENSOCUG00000006684 I 0.970
LOC100408013 Callithrix jacchus ENSCJAG00000016062 I 0.970
XR_022443.1 Pan troglodytes ENSPTRG00000018106 I 0.970
Sfrs3 Rattus norvegicus ENSRNOG00000000520 I 0.970
SFRS3 Taeniopygia guttata ENSTGUG00000000928 I 0.970
SRSF3 Vicugna pacos ENSVPAG00000005481 I 0.970
SRSF3 Tetraodon nigroviridis ENSTNIG00000014643 N 0.970
SRSF3 Tupaia belangeri ENSTBEG00000012272 I 0.970
SRSF3 Spermophilus tridecemlineatus ENSSTOG00000014280 I 0.970
Srsf3 Mus musculus ENSMUSG00000071172 I 0.970
srsf3 Xenopus tropicalis ENSXETG00000001701 I 0.970
SRSF3 Pteropus vampyrus ENSPVAG00000014621 I 0.970
SRSF3 Monodelphis domestica ENSMODG00000013539 I 0.970
SRSF3 Echinops telfairi ENSETEG00000010117 I 0.970
SRSF3 Felis catus ENSFCAG00000001084 I 0.970
SRSF3 Homo sapiens ENSG00000112081 I 0.970
Ame_R002060 Ailuropoda melanoleuca Ame_R002060 I 0.970
LOC100053336 Equus caballus ENSECAG00000018741 I 0.970
srsf3b Danio rerio ENSDARG00000059360 I 0.970
ENSDORG00000012283 Dipodomys ordii ENSDORG00000012283 I 0.970
SRSF3 Gasterosteus aculeatus ENSGACG00000001042 N 0.970
SFRS3 Gallus gallus ENSGALG00000000533 I 0.970
SRSF3 Microcebus murinus ENSMICG00000004674 I 0.970
SFRS3_BOVIN Bos taurus ENSBTAG00000040006 I 0.970
SRSF3 Macaca mulatta ENSMMUG00000014306 I 0.970
SRSF3 Meleagris gallopavo ENSMGAG00000002503 I 0.970
SRSF3 Anolis carolinensis ENSACAG00000016637 I 0.970
SRSF3 Tursiops truncatus ENSTTRG00000013447 I 0.970
SRSF3 Gorilla gorilla ENSGGOG00000017186 I 0.970
ENSLAFG00000018193 Loxodonta africana ENSLAFG00000018193 I 0.970
AAH46661 Xenopus laevis AAH46661 I 0.955
SRSF3 Sus scrofa ENSSSCG00000001564 I 0.955
Gm12355 Mus musculus ENSMUSG00000078134 I 0.955
SRSF3 Tetraodon nigroviridis ENSTNIG00000001003 I 0.955
SRSF3 Oryzias latipes ENSORLG00000020054 I 0.939
SRSF3 Gasterosteus aculeatus ENSGACG00000001473 N 0.909
ENSLAFG00000026731 Loxodonta africana ENSLAFG00000026731 N 0.909
SRSF3 Erinaceus europaeus ENSEEUG00000001119 N 0.833
SRSF3 Myotis lucifugus ENSMLUG00000010671 N 0.833
SRSF3 Choloepus hoffmanni ENSCHOG00000002515 N 0.833
SRSF3 Otolemur garnettii ENSOGAG00000000502 N 0.833
amel4_ncbi_hmm63829 Apis mellifera amel4_ncbi_hmm63829 I 0.788
amel4_ncbi_hmm65494 Apis mellifera amel4_ncbi_hmm65494 I 0.788
ENSCSAVG00000002676 Ciona savignyi ENSCSAVG00000002676 I 0.788
estExt_fgenesh1_pm.C_10147 Daphnia pulex estExt_fgenesh1_pm.C_10147 I 0.788
ENSCING00000011663 Ciona intestinalis ENSCING00000011663 I 0.788
gw.267.29.1 Branchiostoma floridae gw.267.29.1 N 0.773
nasonia_NCBI_hmm78264 Nasonia vitripennis nasonia_NCBI_hmm78264 I 0.773
PHUM565080 Pediculus humanus PHUM565080 I 0.758
AGAP007325 Anopheles gambiae AGAP007325 I 0.758
AAEL001356 Aedes aegypti AAEL001356 I 0.758
nasonia_NCBI_hmm124154 Nasonia vitripennis nasonia_NCBI_hmm124154 I 0.758
CPIJ003074 Culex quinquefasciatus CPIJ003074 I 0.742
CpipJ_CPIJ003074 Culex pipiens CpipJ_CPIJ003074 I 0.742
PASA_GEN_2500115 Daphnia pulex PASA_GEN_2500115 I 0.727
Rbp1-like Drosophila melanogaster FBgn0030479 D 0.727
GH24472 Drosophila grimshawi FBgn0131928 I 0.727
GI15337 Drosophila mojavensis FBgn0138086 I 0.727
GL26725 Drosophila persimilis FBgn0164306 I 0.727
GG19507 Drosophila erecta FBgn0111709 I 0.727
GG17683 Drosophila erecta FBgn0109905 I 0.727
GA15173-RA Drosophila pseudoobscura FBgn0075198 I 0.727
GF17902 Drosophila ananassae FBgn0094920 I 0.727
GF19500 Drosophila ananassae FBgn0096507 I 0.727
GM13734 Drosophila sechellia FBgn0168665 N 0.727
GM23896 Drosophila sechellia FBgn0178761 I 0.727
GK16401 Drosophila willistoni FBgn0218403 I 0.727
GE16161 Drosophila yakuba FBgn0233705 I 0.727
GE26048 Drosophila yakuba FBgn0243090 I 0.727
PHUM357390 Pediculus humanus PHUM357390 I 0.727
GJ14774 Drosophila virilis FBgn0201978 I 0.727
Rbp1 Drosophila melanogaster FBgn0260944 D 0.727
GD18708 Drosophila simulans FBgn0190229 I 0.727
SRSF7 Spermophilus tridecemlineatus ENSSTOG00000004389 N 0.712
GK13897 Drosophila willistoni FBgn0215904 I 0.712
GJ10582 Drosophila virilis FBgn0197862 I 0.712