CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCL
(
Taeniopygia guttata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTGUG00000009782
T41943_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000010096
RRM
221
289
MFVGNLVSAKDFEELKTGLREFFGKKNIEVLDVRISATRRFGYVDFSSAEDLDKALQMNGKKLMGVEVK
ENSTGUP00000010096
RRM
311
377
LFLKNLPYRITEDDIREVFENALEVRIVMNKDGNSRGMAYVEFKTEAEADKALEEKQGTEIEGRAVV
ENSTGUP00000010096
RRM
405
471
LIVNNLSYAATEETLQEVFKKASSIRVPQNNQGRPKGYAFVDFATAEDAKEALNSLNNTEIEGRTIR
ENSTGUP00000010096
RRM
491
558
LFVRGLSEDTTEETLRESFEGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVT
Links
Other
RRM
family RBPs
Other
Taeniopygia guttata
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NUCL_CHICK
Gallus gallus
ENSGALG00000007705
I
0.823
NCL
Meleagris gallopavo
ENSMGAG00000008147
I
0.815
NCL
Anolis carolinensis
ENSACAG00000001006
N
0.753
NCL
Ornithorhynchus anatinus
ENSOANG00000008732
I
0.712
NCL
Macropus eugenii
ENSMEUG00000012335
I
0.708
NCL
Monodelphis domestica
ENSMODG00000002470
I
0.701