NUCL_CHICK (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000007705 T37667_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000012472 RRM 283 351
ENSGALP00000012472 RRM 373 439
ENSGALP00000012472 RRM 463 529
ENSGALP00000012472 RRM 555 622
ENSGALP00000032625 RRM 281 349
ENSGALP00000032625 RRM 371 437
ENSGALP00000032625 RRM 461 527
ENSGALP00000032625 RRM 553 620

Links

Other RRM family RBPs
Other Gallus gallus RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Meleagris gallopavo ENSMGAG00000008147 I 0.985
NCL Taeniopygia guttata ENSTGUG00000009782 N 0.823
NCL Anolis carolinensis ENSACAG00000001006 N 0.742
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.723
NCL Macropus eugenii ENSMEUG00000012335 I 0.723
NCL Bos taurus ENSBTAG00000016174 I 0.720
NCL Monodelphis domestica ENSMODG00000002470 I 0.716
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.716
NCL Canis familiaris ENSCAFG00000011037 I 0.712
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.712
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.712
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.712
NCL Gorilla gorilla ENSGGOG00000004300 I 0.708
NCL Homo sapiens ENSG00000115053 D 0.708
NCL Pan troglodytes ENSPTRG00000013025 I 0.708
NCL Macaca mulatta ENSMMUG00000018094 I 0.708
NCL Tursiops truncatus ENSTTRG00000009094 I 0.708
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.705
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.705