NCL (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000002470 T39054_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.815
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000003000 RRM 290 358
ENSMODP00000003000 RRM 374 440
ENSMODP00000003000 RRM 474 540
ENSMODP00000003000 RRM 561 628
ENSMODP00000021210 RRM 193 261
ENSMODP00000021210 RRM 277 343
ENSMODP00000021210 RRM 377 443
ENSMODP00000021210 RRM 464 531

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Macropus eugenii ENSMEUG00000012335 I 0.963
NCL Tursiops truncatus ENSTTRG00000009094 I 0.819
NCL Pan troglodytes ENSPTRG00000013025 I 0.815
NCL Homo sapiens ENSG00000115053 D 0.815
NCL Gorilla gorilla ENSGGOG00000004300 I 0.815
NCL Tarsius syrichta ENSTSYG00000004355 I 0.815
NCL Macaca mulatta ENSMMUG00000018094 I 0.815
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.812
NCL Bos taurus ENSBTAG00000016174 I 0.812
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.812
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.812
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.808
NCL Canis familiaris ENSCAFG00000011037 I 0.808
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.804
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.804
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.804
NCL Microcebus murinus ENSMICG00000002538 I 0.786
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.779
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.779
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.775
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.768
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.764
Ncl Mus musculus ENSMUSG00000026234 I 0.764
Ncl Dipodomys ordii ENSDORG00000012513 I 0.742
NCL Meleagris gallopavo ENSMGAG00000008147 I 0.720
NUCL_CHICK Gallus gallus ENSGALG00000007705 I 0.716
NCL Cavia porcellus ENSCPOG00000001034 I 0.712
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.712
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.708
NCL Anolis carolinensis ENSACAG00000001006 N 0.708
ncl Xenopus tropicalis ENSXETG00000009517 N 0.705
NCL Taeniopygia guttata ENSTGUG00000009782 N 0.701