NCL (Macropus eugenii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMEUG00000012335 T38247_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.819
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMEUP00000011245 RRM 277 345
ENSMEUP00000011245 RRM 361 427
ENSMEUP00000011245 RRM 454 520
ENSMEUP00000011245 RRM 541 608

Links

Other RRM family RBPs
Other Macropus eugenii RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Monodelphis domestica ENSMODG00000002470 I 0.963
NCL Tarsius syrichta ENSTSYG00000004355 I 0.819
NCL Pan troglodytes ENSPTRG00000013025 I 0.819
NCL Homo sapiens ENSG00000115053 D 0.819
NCL Gorilla gorilla ENSGGOG00000004300 I 0.819
NCL Macaca mulatta ENSMMUG00000018094 I 0.819
NCL Bos taurus ENSBTAG00000016174 I 0.815
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.815
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.815
NCL Tursiops truncatus ENSTTRG00000009094 I 0.815
NCL Canis familiaris ENSCAFG00000011037 I 0.812
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.812
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.808
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.808
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.808
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.808
NCL Microcebus murinus ENSMICG00000002538 I 0.790
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.786
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.786
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.779
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.764
Ncl Mus musculus ENSMUSG00000026234 I 0.760
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.760
Ncl Dipodomys ordii ENSDORG00000012513 I 0.738
NCL Anolis carolinensis ENSACAG00000001006 N 0.731
NCL Meleagris gallopavo ENSMGAG00000008147 I 0.727
NUCL_CHICK Gallus gallus ENSGALG00000007705 I 0.723
NCL Cavia porcellus ENSCPOG00000001034 I 0.712
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.712
NCL Taeniopygia guttata ENSTGUG00000009782 N 0.708
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.708
ncl Xenopus tropicalis ENSXETG00000009517 N 0.701