SRSF9 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000000697 T41998_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.761
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.761
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.761
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.735
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.735
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.735
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.735
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.735
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.735
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.735
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.735
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.735
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000001301 RRM 16 83
ENSTNIP00000001301 RRM 111 174

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF9 Gasterosteus aculeatus ENSGACG00000016921 I 0.955
SRSF9 Danio rerio ENSDARG00000008097 I 0.924
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.780
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.780
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.767
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.767
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.767
Srsf9 Mus musculus ENSMUSG00000029538 I 0.767
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.767
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.767
SRSF9 Homo sapiens ENSG00000111786 D 0.767
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.767
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.767
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.767
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.767
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.767
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.767
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.767
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.759
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.759
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.759
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.752
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.752
AAH84289 Xenopus laevis AAH84289 I 0.722
SRSF9 Tupaia belangeri ENSTBEG00000008499 I 0.714
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.709
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.701
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.701
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.701
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.701
Srsf1 Mus musculus ENSMUSG00000018379 I 0.701
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.701
SRSF1 Homo sapiens ENSG00000136450 D 0.701
AAH42354 Xenopus laevis AAH42354 I 0.701
AAI23123 Xenopus laevis AAI23123 I 0.701
AAI28932 Xenopus laevis AAI28932 I 0.701
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.701
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.701
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.701
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.701
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.701
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.701
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.701
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.701
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.701
LOC100056763 Equus caballus ENSECAG00000016654 I 0.701
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.701
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.701
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.701