srsf1 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000008954 T42855_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.992
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.992
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.992
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.992
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.992
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.992
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.992
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.992
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.992
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.992
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.776
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.776
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.776
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000019608 RRM 36 103
ENSXETP00000019608 RRM 160 223

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI28932 Xenopus laevis AAI28932 I 1.000
AAI23123 Xenopus laevis AAI23123 I 1.000
AAH42354 Xenopus laevis AAH42354 I 1.000
LOC100056763 Equus caballus ENSECAG00000016654 I 0.992
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.992
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.992
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.992
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.992
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.992
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.992
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.992
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.992
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.992
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.992
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.992
SRSF1 Homo sapiens ENSG00000136450 D 0.992
Srsf1 Mus musculus ENSMUSG00000018379 I 0.992
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.992
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.992
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.992
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.992
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.985
srsf1a Danio rerio ENSDARG00000057691 I 0.977
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.977
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.977
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.977
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.977
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.977
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.977
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.977
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.977
SRSF1 Sorex araneus ENSSARG00000010949 I 0.977
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.962
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.955
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.947
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.947
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.947
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.947
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.940
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.932
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.924
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.902
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.895
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.886
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.856
ISCW014398 Ixodes scapularis ISCW014398 I 0.856
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.848
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.833
SRSF1 Felis catus ENSFCAG00000002250 I 0.821
SRSF1 Dasypus novemcinctus ENSDNOG00000011737 I 0.821
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.818
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.818
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.811
ENSOCUG00000010894 Oryctolagus cuniculus ENSOCUG00000010894 I 0.803
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.803
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.795
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.795
ENSORLG00000005314 Oryzias latipes ENSORLG00000005314 I 0.795
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.788
SRSF1 Pteropus vampyrus ENSPVAG00000000519 I 0.784
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.782
Srsf9 Mus musculus ENSMUSG00000029538 I 0.782
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.782
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.782
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.782
SRSF9 Homo sapiens ENSG00000111786 D 0.782
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.782
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.782
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.782
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.782
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.782
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.782
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.782
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.782
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.782
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.780
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.780
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.780
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.780
AAEL006473 Aedes aegypti AAEL006473 I 0.780
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.774
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.774
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.774
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.773
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.773
GL22249 Drosophila persimilis FBgn0159841 I 0.773
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.769
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.767
Smp_185230 Schistosoma mansoni Smp_185230 I 0.767
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.767
GH18077 Drosophila grimshawi FBgn0125545 I 0.765
GK13511 Drosophila willistoni FBgn0215519 I 0.765
AGAP010496 Anopheles gambiae AGAP010496 I 0.765
GF16525 Drosophila ananassae FBgn0093546 I 0.765
GE26323 Drosophila yakuba FBgn0243353 I 0.765
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.761
LOAG_10275 Loa loa LOAG_10275 I 0.758
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.752
186029 Helobdella robusta 186029 I 0.750
Minc06188 Meloidogyne incognita Minc06188 I 0.744
Minc04015 Meloidogyne incognita Minc04015 I 0.744
CRE13382 Caenorhabditis remanei CRE13382 I 0.742
CBN06053 Caenorhabditis brenneri CBN06053 I 0.742
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.735
SRSF9 Gasterosteus aculeatus ENSGACG00000016921 I 0.731
SRSF9 Tursiops truncatus ENSTTRG00000000145 I 0.729
CBG03563 Caenorhabditis briggsae CBG03563 I 0.727
AAH84289 Xenopus laevis AAH84289 I 0.724
SRSF9 Tupaia belangeri ENSTBEG00000008499 I 0.722
CJA01159 Caenorhabditis japonica CJA01159 I 0.720
Bm1_45785 Brugia malayi Bm1_45785 N 0.705
WUBG_03274 Wuchereria bancrofti WUBG_03274 N 0.705
LOAG_04334 Loa loa LOAG_04334 N 0.705
LOAG_04332 Loa loa LOAG_04332 N 0.705
SRSF9 Danio rerio ENSDARG00000008097 I 0.701
SRSF9 Tetraodon nigroviridis ENSTNIG00000000697 I 0.701