CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RDBP
(
Tarsius syrichta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTSYG00000012132
T42503_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000011131
RRM
266
325
YGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMEFADQAVAELNGTQVESIQLK
Links
Other
RRM
family RBPs
Other
Tarsius syrichta
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RDBP
Myotis lucifugus
ENSMLUG00000000622
N
0.967
RDBP
Macaca mulatta
ENSMMUG00000000735
N
0.967
Rdbp
Mus musculus
ENSMUSG00000024369
N
0.967
RDBP
Microcebus murinus
ENSMICG00000003287
N
0.967
RDBP
Loxodonta africana
ENSLAFG00000028155
N
0.967
RDBP
Tursiops truncatus
ENSTTRG00000005923
N
0.967
RDBP
Gorilla gorilla
ENSGGOG00000002265
N
0.967
RDBP
Oryctolagus cuniculus
ENSOCUG00000007012
N
0.967
RDBP
Ochotona princeps
ENSOPRG00000003942
N
0.967
Rdbp
Rattus norvegicus
ENSRNOG00000000420
N
0.967
RDBP
Sus scrofa
ENSSSCG00000001423
N
0.967
RDBP
Pteropus vampyrus
ENSPVAG00000005135
N
0.967
RDBP
Pan troglodytes
ENSPTRG00000017996
N
0.967
RDBP
Procavia capensis
ENSPCAG00000004108
N
0.967
ENSPPYG00000016471
Pongo pygmaeus
ENSPPYG00000016471
N
0.967
AL662849.4
Homo sapiens
ENSG00000231044
N
0.967
BX005143.2
Homo sapiens
ENSG00000233801
N
0.967
A6MKH3_CALJA
Callithrix jacchus
ENSCJAG00000002368
N
0.967
ENSDARG00000078711
Danio rerio
ENSDARG00000078711
N
0.967
RDBP
Canis familiaris
ENSCAFG00000000690
N
0.967
NELFE_BOVIN
Bos taurus
ENSBTAG00000007453
N
0.967
Ame_R018444
Ailuropoda melanoleuca
Ame_R018444
N
0.967
CR759782.5
Homo sapiens
ENSG00000229363
N
0.967
Rdbp
Dipodomys ordii
ENSDORG00000011705
N
0.967
CR388219.1
Homo sapiens
ENSG00000206268
N
0.967
AL844853.7
Homo sapiens
ENSG00000206357
N
0.967
RDBP
Homo sapiens
ENSG00000204356
N
0.967
RDBP
Felis catus
ENSFCAG00000004518
N
0.967
LOC100051271
Equus caballus
ENSECAG00000012274
N
0.967
RDBP
Dasypus novemcinctus
ENSDNOG00000009997
N
0.950
RDBP
Cavia porcellus
ENSCPOG00000023834
N
0.950
RDBP
Sorex araneus
ENSSARG00000003684
N
0.900
RDBP
Macropus eugenii
ENSMEUG00000006053
N
0.871
RDBP
Monodelphis domestica
ENSMODG00000015063
N
0.855
RDBP
Ornithorhynchus anatinus
ENSOANG00000009900
N
0.833
RDBP
Anolis carolinensis
ENSACAG00000011678
N
0.750