CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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snrpa
(
Xenopus tropicalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSXETG00000002585
T42827_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000005513
RRM
12
58
IYINNLNEKIKKDELKKSLYAIFSQFGQILDILAEYGTHRQGRAGRV
ENSXETP00000005513
RRM
211
276
LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSM
Links
Other
RRM
family RBPs
Other
Xenopus tropicalis
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Gm5145
Mus musculus
ENSMUSG00000071273
I
0.792
P45429
Xenopus laevis
P45429
I
0.732
CAA41021
Xenopus laevis
CAA41021
I
0.732
AAH44979
Xenopus laevis
AAH44979
I
0.732
snrpa
Danio rerio
ENSDARG00000018890
I
0.717
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.710
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.710
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.703
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.703
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.703
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.703
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.703
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.703
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.703
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.703
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.703
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.703
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.703
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.703
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.703
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.703
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.703
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.703
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.703
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.703
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.703
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.703
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.703
SNRPA
Homo sapiens
ENSG00000077312
D
0.703
SNRPA
Felis catus
ENSFCAG00000016209
I
0.703
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.703