Snrpa (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000061479 T39399_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.978
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.978
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.978
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.978
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.978
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.978
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.978
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.978
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.826
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000079228 RRM 18 89
ENSMUSP00000079228 RRM 215 280
ENSMUSP00000113678 RRM 18 89
ENSMUSP00000113678 RRM 215 280
ENSMUSP00000115335 RRM 18 89
ENSMUSP00000115335 RRM 215 247

Links

Other RRM family RBPs
Other Mus musculus RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.978
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.978
SNRPA Felis catus ENSFCAG00000016209 I 0.978
SNRPA Homo sapiens ENSG00000077312 D 0.978
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.978
LOC100068274 Equus caballus ENSECAG00000013141 I 0.978
SNRPA Sus scrofa ENSSSCG00000002998 I 0.978
SNRPA Canis familiaris ENSCAFG00000005091 I 0.978
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.978
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.978
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.978
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.978
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.978
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.978
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.978
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.978
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.978
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.978
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.978
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.971
SNRPA Procavia capensis ENSPCAG00000012325 I 0.971
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.971
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.964
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.964
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.957
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.957
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.957
P45429 Xenopus laevis P45429 I 0.942
AAH44979 Xenopus laevis AAH44979 I 0.942
CAA41021 Xenopus laevis CAA41021 I 0.942
snrpa Danio rerio ENSDARG00000018890 I 0.942
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.935
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.928
SNRPA Echinops telfairi ENSETEG00000019205 I 0.920
SNRPA Oryzias latipes ENSORLG00000006536 I 0.920
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.884
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.877
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.863
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.862
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.855
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.849
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.848
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.848
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.848
AAEL002980 Aedes aegypti AAEL002980 I 0.841
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.841
AAEL014167 Aedes aegypti AAEL014167 I 0.841
AGAP011637 Anopheles gambiae AGAP011637 I 0.833
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.833
GJ16850 Drosophila virilis FBgn0204029 I 0.833
snf Drosophila mojavensis FBgn0069598 I 0.833
GK25839 Drosophila willistoni FBgn0227798 I 0.833
GH24608 Drosophila grimshawi FBgn0132064 I 0.833
Gm5145 Mus musculus ENSMUSG00000071273 I 0.833
GF21334 Drosophila ananassae FBgn0098336 I 0.826
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.826
SNRPA Microcebus murinus ENSMICG00000009766 I 0.826
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.826
snf Drosophila melanogaster FBgn0003449 D 0.826
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.826
GG18748 Drosophila erecta FBgn0110957 I 0.826
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.826
GM12396 Drosophila sechellia FBgn0167333 I 0.826
GE16390 Drosophila yakuba FBgn0233919 I 0.826
GL14287 Drosophila persimilis FBgn0151892 I 0.826
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.806
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.806
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.806
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.804
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.799
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.799
LOC100050830 Equus caballus ENSECAG00000018407 I 0.799
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.799
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.799
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.799
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.799
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.799
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.799
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.799
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.799
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.799
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.799
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.799
SNRPB2 Homo sapiens ENSG00000125870 I 0.799
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.799
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.799
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.799
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.799
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.799
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.799
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.799
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.799
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.799
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.799
AAH84107 Xenopus laevis AAH84107 I 0.797
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.797
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.791
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.791
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.791
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.791
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.791
AAH72799 Xenopus laevis AAH72799 I 0.784
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.777
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.775
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.775
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.775
snrpb2 Danio rerio ENSDARG00000039424 I 0.768
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.763
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.761
105398 Helobdella robusta 105398 I 0.754
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.754
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.754
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.754
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.746
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.746
PHUM577720 Pediculus humanus PHUM577720 N 0.733
186191 Helobdella robusta 186191 I 0.725
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.712
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.712
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.712
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.705
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.703
snrpa Xenopus tropicalis ENSXETG00000002585 N 0.703