Gm5145 (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000071273 T39416_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.833
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.833
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.833
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.833
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.833
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.833
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.833
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.833
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000093293 RRM 12 64
ENSMUSP00000093293 RRM 202 265

Links

Other RRM family RBPs
Other Mus musculus RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.833
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.833
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.833
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.833
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.833
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.833
SNRPA Felis catus ENSFCAG00000016209 I 0.833
SNRPA Homo sapiens ENSG00000077312 D 0.833
LOC100068274 Equus caballus ENSECAG00000013141 I 0.833
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.833
SNRPA Canis familiaris ENSCAFG00000005091 I 0.833
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.833
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.833
Snrpa Mus musculus ENSMUSG00000061479 I 0.833
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.833
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.833
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.833
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.833
SNRPA Sus scrofa ENSSSCG00000002998 I 0.833
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.833
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.833
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.826
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.826
SNRPA Procavia capensis ENSPCAG00000012325 I 0.826
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.819
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.819
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.812
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.804
snrpa Danio rerio ENSDARG00000018890 I 0.797
snrpa Xenopus tropicalis ENSXETG00000002585 N 0.792
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.790
AAH44979 Xenopus laevis AAH44979 I 0.790
CAA41021 Xenopus laevis CAA41021 I 0.790
P45429 Xenopus laevis P45429 I 0.790
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.783
SNRPA Oryzias latipes ENSORLG00000006536 I 0.775
SNRPA Echinops telfairi ENSETEG00000019205 I 0.768
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.739
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.732
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.719
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.717
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.712
AAEL014167 Aedes aegypti AAEL014167 I 0.710
AAEL002980 Aedes aegypti AAEL002980 I 0.710
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.703
GG18748 Drosophila erecta FBgn0110957 I 0.703
snf Drosophila melanogaster FBgn0003449 D 0.703
snf Drosophila mojavensis FBgn0069598 I 0.703
GH24608 Drosophila grimshawi FBgn0132064 I 0.703
GK25839 Drosophila willistoni FBgn0227798 I 0.703
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.703
AGAP011637 Anopheles gambiae AGAP011637 I 0.703
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.703
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.703
GJ16850 Drosophila virilis FBgn0204029 I 0.703
GE16390 Drosophila yakuba FBgn0233919 I 0.703
GM12396 Drosophila sechellia FBgn0167333 I 0.703