CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Gm5145
(
Mus musculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMUSG00000071273
T39416_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.833
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.833
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.833
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.833
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.833
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.833
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.833
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.833
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.703
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000093293
RRM
12
64
IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSMKMRGQAFVIFKEVMK
ENSMUSP00000093293
RRM
202
265
LFLTNLPEETNELMLSMLFNQFPGFKEVRLVRHDIAFVEFDNEVQAGAARDALQGFKITQNNAM
Links
Other
RRM
family RBPs
Other
Mus musculus
RBPs
57 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.833
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.833
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.833
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.833
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.833
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.833
SNRPA
Felis catus
ENSFCAG00000016209
I
0.833
SNRPA
Homo sapiens
ENSG00000077312
D
0.833
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.833
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.833
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.833
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.833
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.833
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.833
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.833
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.833
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.833
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.833
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.833
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.833
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.833
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.826
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.826
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.826
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.819
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.819
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.812
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.804
snrpa
Danio rerio
ENSDARG00000018890
I
0.797
snrpa
Xenopus tropicalis
ENSXETG00000002585
N
0.792
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.790
AAH44979
Xenopus laevis
AAH44979
I
0.790
CAA41021
Xenopus laevis
CAA41021
I
0.790
P45429
Xenopus laevis
P45429
I
0.790
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.783
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.775
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.768
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.739
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.732
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.719
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.717
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.712
AAEL014167
Aedes aegypti
AAEL014167
I
0.710
AAEL002980
Aedes aegypti
AAEL002980
I
0.710
SNRPA
Loxodonta africana
ENSLAFG00000026568
I
0.703
GG18748
Drosophila erecta
FBgn0110957
I
0.703
snf
Drosophila melanogaster
FBgn0003449
D
0.703
snf
Drosophila mojavensis
FBgn0069598
I
0.703
GH24608
Drosophila grimshawi
FBgn0132064
I
0.703
GK25839
Drosophila willistoni
FBgn0227798
I
0.703
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.703
AGAP011637
Anopheles gambiae
AGAP011637
I
0.703
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.703
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.703
GJ16850
Drosophila virilis
FBgn0204029
I
0.703
GE16390
Drosophila yakuba
FBgn0233919
I
0.703
GM12396
Drosophila sechellia
FBgn0167333
I
0.703