CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM16372
(
Drosophila sechellia
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0171287
T43828_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0197849
RRM
5
52
FCRDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSRSIR
FBpp0197849
RRM
95
156
GALSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVK
Links
Other
RRM
family RBPs
Other
Drosophila sechellia
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GH17442
Drosophila grimshawi
FBgn0124912
N
0.982
GF18877
Drosophila ananassae
FBgn0095891
N
0.973
GK22643
Drosophila willistoni
FBgn0224620
N
0.964
GL23650
Drosophila persimilis
FBgn0161240
N
0.955
GG11590
Drosophila erecta
FBgn0103887
N
0.947
GI22767
Drosophila mojavensis
FBgn0145494
N
0.930
CG34354
Drosophila melanogaster
FBgn0085383
N
0.805
GD21365
Drosophila simulans
FBgn0192802
N
0.805
GJ22770
Drosophila virilis
FBgn0209874
N
0.805
AGAP005292
Anopheles gambiae
AGAP005292
N
0.714