CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ22770
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0209874
T44112_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0237187
RRM
69
139
IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSRSIR
FBpp0237187
RRM
182
243
GALSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVK
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG34354
Drosophila melanogaster
FBgn0085383
N
1.000
GD21365
Drosophila simulans
FBgn0192802
N
1.000
AGAP005292
Anopheles gambiae
AGAP005292
N
0.872
GH17439
Drosophila grimshawi
FBgn0124909
N
0.835
GI22766
Drosophila mojavensis
FBgn0145493
N
0.835
GM16370
Drosophila sechellia
FBgn0171285
N
0.835
GJ22768
Drosophila virilis
FBgn0209872
N
0.835
GD21364
Drosophila simulans
FBgn0192801
N
0.835
GK22641
Drosophila willistoni
FBgn0224618
N
0.835
GG11588
Drosophila erecta
FBgn0103885
N
0.835
CG34362
Drosophila melanogaster
FBgn0085391
N
0.835
GF18875
Drosophila ananassae
FBgn0095889
N
0.835
GE23777
Drosophila yakuba
FBgn0240933
N
0.835
GL23648
Drosophila persimilis
FBgn0161238
N
0.827
GA26680-RA
Drosophila pseudoobscura
FBgn0248053
N
0.827
GF18877
Drosophila ananassae
FBgn0095891
N
0.805
GH17442
Drosophila grimshawi
FBgn0124912
N
0.805
GG11590
Drosophila erecta
FBgn0103887
N
0.805
GM16372
Drosophila sechellia
FBgn0171287
N
0.805
GK22643
Drosophila willistoni
FBgn0224620
N
0.797
GI22767
Drosophila mojavensis
FBgn0145494
N
0.797
GL23650
Drosophila persimilis
FBgn0161240
N
0.797
PHUM511750
Pediculus humanus
PHUM511750
N
0.779
DGIL_AUG5s2018g1t1
Acyrtosiphon pisum
DGIL_AUG5s2018g1t1
N
0.706