CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PredSwiss_CON266.4
(
Pneumocystis carinii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PredSwiss_CON266.4
T54689_0.6
Pneumocystis Genome Project (2010-Oct-5)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PredSwiss_CON266.4
RRM
15
85
IYVGNLDERTTDAILWELFLQCGPVVNVHLPKDRVSQTHQGFGFCEFLTIEDAEYACRIMNQIKLYGKPIR
PredSwiss_CON266.4
RRM
103
173
LFVGNLDPLVNEKVLYDTFSIFGMLVAPPKIARDDSGQSKCFGFISFDSFEAADAAIEGMNNQFLMNKSIT
Links
Other
RRM
family RBPs
Other
Pneumocystis carinii
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PredSwiss_ASS2010_2420.1
Pneumocystis carinii
PredSwiss_ASS2010_2420.1
N
1.000
genemark.276_g
Pleurotus ostreatus
genemark.276_g
N
0.741
GSTUMT00011313001
Tuber melanosporum
GSTUMT00011313001
N
0.739
e_gw1.2.2306.1
Schizophyllum commune
e_gw1.2.2306.1
I
0.727
estExt_fgenesh2_pm.C_20717
Agaricus bisporus
estExt_fgenesh2_pm.C_20717
N
0.720
CC1G_10837
Coprinopsis cinerea
CC1G_10837
N
0.720
e_gw1.2.1555.1
Heterobasidion annosum
e_gw1.2.1555.1
N
0.713
e_gwh2.1.820.1
Phanerochaete chrysosporium
e_gwh2.1.820.1
N
0.713
estExt_fgenesh1_kg.C_70028
Melampsora laricis populina
estExt_fgenesh1_kg.C_70028
N
0.713
sap49
Schizosaccharomyces pombe
SPAC31G5.01
N
0.711
SOCG_01698
Schizosaccharomyces octosporus
SOCG_01698
N
0.711
estExt_Genewise1Plus.C_330054
Phycomyces blakesleeanus
estExt_Genewise1Plus.C_330054
I
0.706
estExt_Genewise1Plus.C_920074
Postia placenta
estExt_Genewise1Plus.C_920074
I
0.706
ARB_04284
Arthroderma benhamiae
ARB_04284
N
0.704
MCYG_05258
Microsporum canis
MCYG_05258
N
0.704
TERG_06435
Trichophyton rubrum
TERG_06435
N
0.704
MGYG_06302
Microsporum gypseum
MGYG_06302
N
0.704
TRV_00155
Trichophyton verrucosum
TRV_00155
N
0.704