CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
70687
(
Helobdella robusta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
70687
T48852_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
70687
RRM
74
144
VFVTNIHEETQEDDVREKFEEFGEIKNLHLNLDRRTGFLKGYALVEYNTYKEAEAAIQTLNGTDICGQKIN
Links
Other
RRM
family RBPs
Other
Helobdella robusta
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
166240
Helobdella robusta
166240
N
0.859
WUBG_00553
Wuchereria bancrofti
WUBG_00553
N
0.718
AGAP006365
Anopheles gambiae
AGAP006365
I
0.718
CBN21335
Caenorhabditis brenneri
CBN21335
N
0.718
LOAG_04407
Loa loa
LOAG_04407
N
0.718
AAEL006748
Aedes aegypti
AAEL006748
N
0.718
Bm1_46120
Brugia malayi
Bm1_46120
N
0.718
e_gw.589.3.1
Branchiostoma floridae
e_gw.589.3.1
I
0.718
estExt_fgeneshTA2_pg.C_30296
Trichoplax adhaerens
estExt_fgeneshTA2_pg.C_30296
N
0.718
estExt_fgenesh2_pg.C_4600002
Branchiostoma floridae
estExt_fgenesh2_pg.C_4600002
I
0.718
rnp-4
Caenorhabditis elegans
R07E5.14
N
0.704
amel4_ncbi_hmm2170
Apis mellifera
amel4_ncbi_hmm2170
I
0.704
GI19803
Drosophila mojavensis
FBgn0142540
I
0.704
rbm8a
Danio rerio
ENSDARG00000016516
I
0.704
e_gw1.53.304.1
Lottia gigantea
e_gw1.53.304.1
I
0.704
CRE20368
Caenorhabditis remanei
CRE20368
I
0.704
CBG18074
Caenorhabditis briggsae
CBG18074
I
0.704