CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Bm1_46120
(
Brugia malayi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Bm1_46120
T28414_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bm1_46120
RRM
453
523
VFVTNVHEEAHEDDVYERFSEYGEIKNMNLNIDRRTGFLKGYALVEYETQKEAFAAIEGLNGAELLGQTIN
Links
Other
RRM
family RBPs
Other
Brugia malayi
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOAG_04407
Loa loa
LOAG_04407
N
0.972
WUBG_00553
Wuchereria bancrofti
WUBG_00553
N
0.958
CRE20368
Caenorhabditis remanei
CRE20368
I
0.732
CJA17011
Caenorhabditis japonica
CJA17011
I
0.732
CBG18074
Caenorhabditis briggsae
CBG18074
I
0.732
70687
Helobdella robusta
70687
N
0.718
estExt_fgeneshTA2_pg.C_30296
Trichoplax adhaerens
estExt_fgeneshTA2_pg.C_30296
N
0.718
rnp-4
Caenorhabditis elegans
R07E5.14
N
0.718
rbm8a
Danio rerio
ENSDARG00000016516
I
0.718
gw.617.10.1
Nematostella vectensis
gw.617.10.1
N
0.718
gw.10.199.1
Nematostella vectensis
gw.10.199.1
N
0.718
e_gw.27.177.1
Nematostella vectensis
e_gw.27.177.1
N
0.718
CBN21335
Caenorhabditis brenneri
CBN21335
N
0.718
estExt_fgenesh2_pg.C_4600002
Branchiostoma floridae
estExt_fgenesh2_pg.C_4600002
I
0.704
e_gw.589.3.1
Branchiostoma floridae
e_gw.589.3.1
I
0.704
RBM8A
Tetraodon nigroviridis
ENSTNIG00000006869
I
0.704
RBM8A
Macropus eugenii
ENSMEUG00000016058
I
0.704
AGAP006365
Anopheles gambiae
AGAP006365
I
0.704
ENSPCAG00000002146
Procavia capensis
ENSPCAG00000002146
I
0.704
RBM8A
Takifugu rubripes
ENSTRUG00000013173
I
0.704
Ppa-rnp-4
Pristionchus pacificus
PPA11325
N
0.704
e_gw1.53.304.1
Lottia gigantea
e_gw1.53.304.1
I
0.704