estExt_fgenesh2_pg.C_4600002 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pg.C_4600002 T50859_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM8A
M054_0.6 		Homo sapiens RYGCGCB RNAcompete
Ray et al.(2013)
RNCMPT00056 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_4600002 RRM 74 144

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.589.3.1 Branchiostoma floridae e_gw.589.3.1 I 1.000
e_gw1.53.304.1 Lottia gigantea e_gw1.53.304.1 I 0.873
amel4_ncbi_hmm2170 Apis mellifera amel4_ncbi_hmm2170 I 0.845
nasonia_NCBI_hmm460663 Nasonia vitripennis nasonia_NCBI_hmm460663 I 0.831
estExt_Genewise1.C_210127 Daphnia pulex estExt_Genewise1.C_210127 I 0.817
rbm8a Danio rerio ENSDARG00000016516 I 0.789
CpipJ_CPIJ007339 Culex pipiens CpipJ_CPIJ007339 I 0.775
CPIJ007339 Culex quinquefasciatus CPIJ007339 I 0.775
AAEL006748 Aedes aegypti AAEL006748 N 0.761
XP_792124.1 Strongylocentrotus purpuratus XP_792124.1 I 0.761
AGAP006365 Anopheles gambiae AGAP006365 I 0.761
RBM8A Gasterosteus aculeatus ENSGACG00000013157 I 0.761
RBM8A Takifugu rubripes ENSTRUG00000013173 I 0.761
RBM8A Tetraodon nigroviridis ENSTNIG00000006869 I 0.761
XP_001194199.1 Strongylocentrotus purpuratus XP_001194199.1 I 0.761
ENSLAFG00000021886 Loxodonta africana ENSLAFG00000021886 I 0.746
estExt_fgeneshTA2_pg.C_30296 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_30296 N 0.746
Q6DTK7_HORSE Equus caballus ENSECAG00000022024 I 0.746
ENSETEG00000017932 Echinops telfairi ENSETEG00000017932 I 0.746
RBM8A Homo sapiens ENSG00000131795 D 0.746
RBM8A Gorilla gorilla ENSGGOG00000005422 I 0.746
RBM8A Felis catus ENSFCAG00000005412 I 0.746
RBM8A Oryctolagus cuniculus ENSOCUG00000025693 I 0.746
Rbm8a Rattus norvegicus ENSRNOG00000021215 I 0.746
RBM8A Pteropus vampyrus ENSPVAG00000014471 I 0.746
RBM8A Sorex araneus ENSSARG00000013289 I 0.746
RBM8A Sus scrofa ENSSSCG00000006684 I 0.746
RBM8A Tursiops truncatus ENSTTRG00000009081 I 0.746
RBM8A Pan troglodytes ENSPTRG00000001201 I 0.746
ENSPPYG00000000929 Pongo pygmaeus ENSPPYG00000000929 I 0.746
Rbm8a Mus musculus ENSMUSG00000038374 I 0.746
RBM8A Monodelphis domestica ENSMODG00000018752 I 0.746
B020018G12Rik Mus musculus ENSMUSG00000078184 I 0.746
RBM8A Otolemur garnettii ENSOGAG00000000202 I 0.746
Q8JJC6_ORYLA Oryzias latipes ENSORLG00000016263 I 0.746
RBM8A Macaca mulatta ENSMMUG00000016051 I 0.746
RBM8A Macropus eugenii ENSMEUG00000016058 I 0.746
Q6PH90 Xenopus laevis Q6PH90 I 0.746
AAH56659 Xenopus laevis AAH56659 I 0.746
AAG27092 Xenopus laevis AAG27092 I 0.746
Ame_R013073 Ailuropoda melanoleuca Ame_R013073 I 0.746
Q9DF42 Xenopus laevis Q9DF42 I 0.746
AAH73361 Xenopus laevis AAH73361 I 0.746
RBM8A Canis familiaris ENSCAFG00000023172 I 0.746
RBM8A Cavia porcellus ENSCPOG00000022453 I 0.746
RBM8A_BOVIN Bos taurus ENSBTAG00000008369 I 0.746
LOC100399389 Callithrix jacchus ENSCJAG00000002209 I 0.746
e_gw.27.177.1 Nematostella vectensis e_gw.27.177.1 N 0.732
gw.10.199.1 Nematostella vectensis gw.10.199.1 N 0.732
B5FZD1_TAEGU Taeniopygia guttata ENSTGUG00000004447 I 0.732
gw.617.10.1 Nematostella vectensis gw.617.10.1 N 0.732
ENSPCAG00000002146 Procavia capensis ENSPCAG00000002146 I 0.732
EuGene.0000060244 Micromonas pusilla EuGene.0000060244 N 0.732
e_gw1.136.78.1 Physcomitrella patens e_gw1.136.78.1 N 0.732
GI19803 Drosophila mojavensis FBgn0142540 I 0.718
GL17620 Drosophila persimilis FBgn0155223 N 0.718
GM21093 Drosophila sechellia FBgn0175974 N 0.718
GD10630 Drosophila simulans FBgn0182397 N 0.718
GSVIVG00026504001 Vitis vinifera GSVIVG00026504001 N 0.718
GG23412 Drosophila erecta FBgn0115559 N 0.718
PHUM390470 Pediculus humanus PHUM390470 N 0.718
e_gw1.31.212.1 Physcomitrella patens e_gw1.31.212.1 N 0.718
ISCW016642 Ixodes scapularis ISCW016642 N 0.718
GE19253 Drosophila yakuba FBgn0236606 N 0.718
70687 Helobdella robusta 70687 N 0.718
GK23248 Drosophila willistoni FBgn0225210 N 0.718
gww1.22.130.1 Laccaria bicolor gww1.22.130.1 I 0.718
fgenesh1_pm.C_scaffold_6000172 Pleurotus ostreatus fgenesh1_pm.C_scaffold_6000172 I 0.718
DGIL_AUG5s25g7t1 Acyrtosiphon pisum DGIL_AUG5s25g7t1 I 0.718
GF11955 Drosophila ananassae FBgn0088994 N 0.718
DGIL_AUG5s13034g4t1 Acyrtosiphon pisum DGIL_AUG5s13034g4t1 I 0.718
e_gw1.6.577.1 Heterobasidion annosum e_gw1.6.577.1 N 0.718
estExt_fgenesh2_kg.C_130331 Serpula lacrymans estExt_fgenesh2_kg.C_130331 I 0.718
tsu Drosophila melanogaster FBgn0033378 N 0.718
GA21317-RA Drosophila pseudoobscura FBgn0081305 N 0.718
RBM8A Spermophilus tridecemlineatus ENSSTOG00000013917 I 0.718
WUBG_00553 Wuchereria bancrofti WUBG_00553 N 0.704
PK01699.1 Cannabis sativa PK01699.1 N 0.704
estExt_fgenesh1_pg.C_1530030 Capitella teleta estExt_fgenesh1_pg.C_1530030 I 0.704
BGIOSIBCE017506 Oryza indica BGIOSIBCE017506 N 0.704
cassava2157.valid.m1 Manihot esculenta cassava2157.valid.m1 N 0.704
Bm1_46120 Brugia malayi Bm1_46120 N 0.704
estExt_fgenesh2_kg.C_60460 Agaricus bisporus estExt_fgenesh2_kg.C_60460 I 0.704
ENSCSAVG00000005685 Ciona savignyi ENSCSAVG00000005685 I 0.704
LOC_Os05g04850 Oryza sativa LOC_Os05g04850 N 0.704
166240 Helobdella robusta 166240 N 0.704
LOAG_04407 Loa loa LOAG_04407 N 0.704
30169.m006469 Ricinus communis 30169.m006469 N 0.704
Aqu1.218379 Amphimedon queenslandica Aqu1.218379 N 0.704