Aqu1.226432 (Amphimedon queenslandica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Aqu1.226432 T49031_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Aqu1.226432 RRM 103 179

Links

Other RRM family RBPs
Other Amphimedon queenslandica RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCBI_GNO_5300025 Daphnia pulex NCBI_GNO_5300025 I 0.727
CNOT4 Monodelphis domestica ENSMODG00000014068 I 0.714
Cnot4 Mus musculus ENSMUSG00000038784 I 0.714
CNOT4 Oryctolagus cuniculus ENSOCUG00000013448 I 0.714
CNOT4 Macaca mulatta ENSMMUG00000016181 I 0.714
CNOT4 Ornithorhynchus anatinus ENSOANG00000005006 I 0.714
CNOT4 Microcebus murinus ENSMICG00000001667 I 0.714
CNOT4 Gorilla gorilla ENSGGOG00000000142 I 0.714
CNOT4 Loxodonta africana ENSLAFG00000000709 I 0.714
CNOT4 Meleagris gallopavo ENSMGAG00000011788 I 0.714
ENSPPYG00000018026 Pongo pygmaeus ENSPPYG00000018026 I 0.714
CNOT4 Pan troglodytes ENSPTRG00000019727 I 0.714
CNOT4 Tarsius syrichta ENSTSYG00000000893 I 0.714
CNOT4 Tursiops truncatus ENSTTRG00000005122 I 0.714
cnot4 Xenopus tropicalis ENSXETG00000010594 I 0.714
CNOT4 Taeniopygia guttata ENSTGUG00000009161 I 0.714
CNOT4 Tupaia belangeri ENSTBEG00000002202 I 0.714
CNOT4 Pteropus vampyrus ENSPVAG00000004905 I 0.714
Cnot4 Rattus norvegicus ENSRNOG00000010795 I 0.714
CNOT4 Sorex araneus ENSSARG00000009778 I 0.714
estExt_fgenesh1_pg.C_960014 Capitella teleta estExt_fgenesh1_pg.C_960014 I 0.714
Q5ZJC9_CHICK Gallus gallus ENSGALG00000011682 I 0.714
CNOT4 Homo sapiens ENSG00000080802 D 0.714
Q5BIS2_BOVIN Bos taurus ENSBTAG00000017919 I 0.714
AGAP009827 Anopheles gambiae AGAP009827 I 0.714
AAH44088 Xenopus laevis AAH44088 I 0.714
Ame_R016242 Ailuropoda melanoleuca Ame_R016242 I 0.714
CNOT4 Canis familiaris ENSCAFG00000003223 I 0.714
CNOT4 Anolis carolinensis ENSACAG00000011154 I 0.714
zgc:63566 Danio rerio ENSDARG00000007639 I 0.714
CNOT4 Cavia porcellus ENSCPOG00000011526 I 0.714
CNOT4 Equus caballus ENSECAG00000020262 I 0.714
CNOT4 Callithrix jacchus ENSCJAG00000012532 I 0.714
CNOT4 Choloepus hoffmanni ENSCHOG00000010412 I 0.714
XP_001179227.1 Strongylocentrotus purpuratus XP_001179227.1 I 0.709
XP_780160.2 Strongylocentrotus purpuratus XP_780160.2 I 0.709
CNOT4 Tetraodon nigroviridis ENSTNIG00000016000 I 0.701
CNOT4 Takifugu rubripes ENSTRUG00000016861 I 0.701
CpipJ_CPIJ019539 Culex pipiens CpipJ_CPIJ019539 I 0.701
CNOT4 Oryzias latipes ENSORLG00000003727 I 0.701
CPIJ019539 Culex quinquefasciatus CPIJ019539 I 0.701
CPIJ000383 Culex quinquefasciatus CPIJ000383 I 0.701
CNOT4 Danio rerio ENSDARG00000007045 I 0.701
CpipJ_CPIJ000383 Culex pipiens CpipJ_CPIJ000383 I 0.701