CpipJ_CPIJ019539 (Culex pipiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CpipJ_CPIJ019539 T29032_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Cnot4
M008_0.6 		Drosophila melanogaster ASACAHW RNAcompete
Ray et al.(2013)
RNCMPT00008 		0.935
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		0.753
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ019539-RA RRM 113 189

Links

Other RRM family RBPs
Other Culex pipiens RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPIJ000383 Culex quinquefasciatus CPIJ000383 I 1.000
CPIJ019539 Culex quinquefasciatus CPIJ019539 I 1.000
CpipJ_CPIJ000383 Culex pipiens CpipJ_CPIJ000383 I 1.000
AGAP009827 Anopheles gambiae AGAP009827 I 0.987
AAEL006664 Aedes aegypti AAEL006664 I 0.974
AAEL009437 Aedes aegypti AAEL009437 I 0.962
GK18552 Drosophila willistoni FBgn0220550 I 0.935
Cnot4 Drosophila melanogaster FBgn0051716 D 0.935
GG10123 Drosophila erecta FBgn0102434 I 0.935
GE18937 Drosophila yakuba FBgn0236309 I 0.935
GD23693 Drosophila simulans FBgn0195070 I 0.935
GI18285 Drosophila mojavensis FBgn0141024 I 0.922
GH13370 Drosophila grimshawi FBgn0120846 I 0.922
GJ21812 Drosophila virilis FBgn0208930 I 0.922
GF15780 Drosophila ananassae FBgn0092804 I 0.922
NCBI_GNO_5300025 Daphnia pulex NCBI_GNO_5300025 I 0.792
estExt_fgenesh1_pg.C_960014 Capitella teleta estExt_fgenesh1_pg.C_960014 I 0.766
nasonia_NCBI_hmm502784 Nasonia vitripennis nasonia_NCBI_hmm502784 I 0.766
CNOT4 Sorex araneus ENSSARG00000009778 I 0.753
CNOT4 Tupaia belangeri ENSTBEG00000002202 I 0.753
Cnot4 Rattus norvegicus ENSRNOG00000010795 I 0.753
CNOT4 Pan troglodytes ENSPTRG00000019727 I 0.753
CNOT4 Taeniopygia guttata ENSTGUG00000009161 I 0.753
CNOT4 Pteropus vampyrus ENSPVAG00000004905 I 0.753
cnot4 Xenopus tropicalis ENSXETG00000010594 I 0.753
Ame_R016242 Ailuropoda melanoleuca Ame_R016242 I 0.753
GL19177 Drosophila persimilis FBgn0156776 I 0.753
AAH44088 Xenopus laevis AAH44088 I 0.753
ENSPPYG00000018026 Pongo pygmaeus ENSPPYG00000018026 I 0.753
CNOT4 Tursiops truncatus ENSTTRG00000005122 I 0.753
CNOT4 Tarsius syrichta ENSTSYG00000000893 I 0.753
CNOT4 Oryctolagus cuniculus ENSOCUG00000013448 I 0.753
CNOT4 Callithrix jacchus ENSCJAG00000012532 I 0.753
CNOT4 Cavia porcellus ENSCPOG00000011526 I 0.753
zgc:63566 Danio rerio ENSDARG00000007639 I 0.753
CNOT4 Equus caballus ENSECAG00000020262 I 0.753
CNOT4 Choloepus hoffmanni ENSCHOG00000010412 I 0.753
CNOT4 Canis familiaris ENSCAFG00000003223 I 0.753
amel4_ncbi_hmm16010 Tribolium castaneum amel4_ncbi_hmm16010 I 0.753
amel4_ncbi_hmm18698 Apis mellifera amel4_ncbi_hmm18698 I 0.753
CNOT4 Anolis carolinensis ENSACAG00000011154 I 0.753
Q5BIS2_BOVIN Bos taurus ENSBTAG00000017919 I 0.753
Q5ZJC9_CHICK Gallus gallus ENSGALG00000011682 I 0.753
CNOT4 Homo sapiens ENSG00000080802 D 0.753
amel4_ncbi_hmm16010 Apis mellifera amel4_ncbi_hmm16010 I 0.753
Cnot4 Mus musculus ENSMUSG00000038784 I 0.753
CNOT4 Gorilla gorilla ENSGGOG00000000142 I 0.753
CNOT4 Microcebus murinus ENSMICG00000001667 I 0.753
CNOT4 Ornithorhynchus anatinus ENSOANG00000005006 I 0.753
CNOT4 Meleagris gallopavo ENSMGAG00000011788 I 0.753
CNOT4 Monodelphis domestica ENSMODG00000014068 I 0.753
CNOT4 Macaca mulatta ENSMMUG00000016181 I 0.753
CNOT4 Loxodonta africana ENSLAFG00000000709 I 0.753
PHUM247100 Pediculus humanus PHUM247100 I 0.740
CNOT4 Tetraodon nigroviridis ENSTNIG00000016000 I 0.740
CNOT4 Oryzias latipes ENSORLG00000003727 I 0.740
CNOT4 Danio rerio ENSDARG00000007045 I 0.740
CNOT4 Takifugu rubripes ENSTRUG00000016861 I 0.740
CNOT4 Gasterosteus aculeatus ENSGACG00000004276 I 0.727
ENSCING00000004364 Ciona intestinalis ENSCING00000004364 I 0.701
111136 Helobdella robusta 111136 I 0.701
Aqu1.226432 Amphimedon queenslandica Aqu1.226432 I 0.701