XP_001179227.1 (Strongylocentrotus purpuratus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_001179227.1 T58858_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		0.790
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_001179227.1 RRM 107 185

Links

Other RRM family RBPs
Other Strongylocentrotus purpuratus RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_780160.2 Strongylocentrotus purpuratus XP_780160.2 I 1.000
estExt_fgenesh1_pg.C_960014 Capitella teleta estExt_fgenesh1_pg.C_960014 I 0.835
CNOT4 Ornithorhynchus anatinus ENSOANG00000005006 I 0.810
CNOT4 Oryctolagus cuniculus ENSOCUG00000013448 I 0.810
ENSPPYG00000018026 Pongo pygmaeus ENSPPYG00000018026 I 0.810
Cnot4 Mus musculus ENSMUSG00000038784 I 0.810
CNOT4 Monodelphis domestica ENSMODG00000014068 I 0.810
CNOT4 Microcebus murinus ENSMICG00000001667 I 0.810
CNOT4 Pan troglodytes ENSPTRG00000019727 I 0.810
CNOT4 Meleagris gallopavo ENSMGAG00000011788 I 0.810
Cnot4 Rattus norvegicus ENSRNOG00000010795 I 0.810
CNOT4 Tursiops truncatus ENSTTRG00000005122 I 0.810
cnot4 Xenopus tropicalis ENSXETG00000010594 I 0.810
Ame_R016242 Ailuropoda melanoleuca Ame_R016242 I 0.810
CNOT4 Tarsius syrichta ENSTSYG00000000893 I 0.810
CNOT4 Taeniopygia guttata ENSTGUG00000009161 I 0.810
CNOT4 Loxodonta africana ENSLAFG00000000709 I 0.810
CNOT4 Sorex araneus ENSSARG00000009778 I 0.810
CNOT4 Tupaia belangeri ENSTBEG00000002202 I 0.810
CNOT4 Pteropus vampyrus ENSPVAG00000004905 I 0.810
CNOT4 Macaca mulatta ENSMMUG00000016181 I 0.810
CNOT4 Choloepus hoffmanni ENSCHOG00000010412 I 0.810
CNOT4 Callithrix jacchus ENSCJAG00000012532 I 0.810
CNOT4 Canis familiaris ENSCAFG00000003223 I 0.810
CNOT4 Gorilla gorilla ENSGGOG00000000142 I 0.810
AAH44088 Xenopus laevis AAH44088 I 0.810
CNOT4 Anolis carolinensis ENSACAG00000011154 I 0.810
CNOT4 Cavia porcellus ENSCPOG00000011526 I 0.810
Q5BIS2_BOVIN Bos taurus ENSBTAG00000017919 I 0.810
CNOT4 Homo sapiens ENSG00000080802 D 0.810
CNOT4 Equus caballus ENSECAG00000020262 I 0.810
zgc:63566 Danio rerio ENSDARG00000007639 I 0.810
CNOT4 Danio rerio ENSDARG00000007045 I 0.810
Q5ZJC9_CHICK Gallus gallus ENSGALG00000011682 I 0.810
CNOT4 Oryzias latipes ENSORLG00000003727 I 0.797
CNOT4 Tetraodon nigroviridis ENSTNIG00000016000 I 0.797
CNOT4 Takifugu rubripes ENSTRUG00000016861 I 0.797
nasonia_NCBI_hmm502784 Nasonia vitripennis nasonia_NCBI_hmm502784 I 0.785
amel4_ncbi_hmm16010 Apis mellifera amel4_ncbi_hmm16010 I 0.785
amel4_ncbi_hmm16010 Tribolium castaneum amel4_ncbi_hmm16010 I 0.785
amel4_ncbi_hmm18698 Apis mellifera amel4_ncbi_hmm18698 I 0.785
CNOT4 Gasterosteus aculeatus ENSGACG00000004276 I 0.785
e_gw1.25.349.1 Lottia gigantea e_gw1.25.349.1 I 0.772
111136 Helobdella robusta 111136 I 0.759
NCBI_GNO_5300025 Daphnia pulex NCBI_GNO_5300025 I 0.747
PHUM247100 Pediculus humanus PHUM247100 I 0.734
ENSCING00000004364 Ciona intestinalis ENSCING00000004364 I 0.722
DGIL_AUG5s3525g11t1 Acyrtosiphon pisum DGIL_AUG5s3525g11t1 I 0.722
Aqu1.226432 Amphimedon queenslandica Aqu1.226432 I 0.709