cassava37261.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava37261.valid.m1 T49353_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava37261.valid.m1 RRM 260 325
cassava37261.valid.m1 RRM 332 371
cassava37261.valid.m1 RRM 759 830

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 1.000
30147.m014409 Ricinus communis 30147.m014409 N 0.833
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.779
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.779
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.779
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.770
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.770
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.770
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.766
PK25465.1 Cannabis sativa PK25465.1 N 0.765
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.765
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.765
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.760
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.760
ppa001307m Prunus persica ppa001307m N 0.760
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.760
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.760
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.755
mgf015667m Mimulus guttatus mgf015667m N 0.755
ppa001327m Prunus persica ppa001327m N 0.755
mgf000415m Mimulus guttatus mgf000415m N 0.755
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.755
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.755
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.755
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.755
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.755
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.755
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.755
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.755
28350.m000106 Ricinus communis 28350.m000106 N 0.750
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.750
PK15886.1 Cannabis sativa PK15886.1 N 0.750
PK24656.1 Cannabis sativa PK24656.1 N 0.750
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.750
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.745
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.740
ppa000845m Prunus persica ppa000845m N 0.740
mgf014747m Mimulus guttatus mgf014747m N 0.737
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.735
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.735
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.735
mgf005765m Mimulus guttatus mgf005765m N 0.732
29693.m002077 Ricinus communis 29693.m002077 N 0.730
SB10G000350 Sorghum bicolor Sb10g000350 N 0.730
ppa000997m Prunus persica ppa000997m N 0.730
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.730
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.722
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.721
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.721
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.721
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.717
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.717
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.711
PK19379.1 Cannabis sativa PK19379.1 N 0.711
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.711
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.711
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.709
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.709
SB04G021130 Sorghum bicolor Sb04g021130 N 0.702
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.701