CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.43.473.1
(
Selaginella moellendorfii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.43.473.1
T50012_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.43.473.1
RRM
321
381
ESTFTEDDVSAHFRSYGPVQDVRIPYQQKRMFGFVTFIYPETVKAILSEGNPHYICGARVL
Links
Other
RRM
family RBPs
Other
Selaginella moellendorfii
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GSVIVG00030048001
Vitis vinifera
GSVIVG00030048001
N
0.770
MDP0000214823
Malus x domestica
MDP0000214823
N
0.770
GRMZM2G003424
Zea mays
GRMZM2G003424
N
0.770
cassava2293.valid.m1
Manihot esculenta
cassava2293.valid.m1
N
0.754
GRMZM2G044004
Zea mays
GRMZM2G044004
N
0.754
PDK_20s1515401g002
Phoenix dactylifera
PDK_20s1515401g002
N
0.754
Cucsa.333940
Cucumis sativus
Cucsa.333940
N
0.738
PK28383.1
Cannabis sativa
PK28383.1
N
0.738
PDK_20s1703901g001
Phoenix dactylifera
PDK_20s1703901g001
N
0.721
mgf013141m
Mimulus guttatus
mgf013141m
N
0.721
AT3G63450
Arabidopsis thaliana
AT3G63450-TAIR-G
N
0.721
Cucsa.067590
Cucumis sativus
Cucsa.067590
N
0.705