GRMZM2G003424 (Zea mays)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		GRMZM2G003424 T01003_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G003424_P01 RRM 55 115
GRMZM2G003424_P02 CCCH ZF 233 254
GRMZM2G003424_P02 RRM 374 433
GRMZM2G003424_P03 RRM 16 76
GRMZM2G003424_P04 RRM 2 51

Links

Other CCCH ZF,RRM family RBPs
Other Zea mays RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G086614 Zea mays GRMZM2G086614 N 1.000
SB01G036490 Sorghum bicolor Sb01g036490 N 1.000
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.976
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.976
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.976
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.976
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.964
SB02G043180 Sorghum bicolor Sb02g043180 N 0.963
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.963
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.963
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.963
ppa023263m Prunus persica ppa023263m N 0.927
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.927
PK28383.1 Cannabis sativa PK28383.1 N 0.918
30169.m006471 Ricinus communis 30169.m006471 N 0.916
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.915
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.915
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.915
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.915
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.915
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.915
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.915
MDP0000243086 Malus x domestica MDP0000243086 N 0.915
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.904
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.902
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.893
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.893
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.892
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.890
MDP0000120231 Malus x domestica MDP0000120231 N 0.880
ppa002413m Prunus persica ppa002413m N 0.880
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.880
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.878
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.878
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.878
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.878
mgf013141m Mimulus guttatus mgf013141m N 0.869
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.869
mgf014647m Mimulus guttatus mgf014647m N 0.867
MDP0000220601 Malus x domestica MDP0000220601 N 0.867
MDP0000120462 Malus x domestica MDP0000120462 N 0.867
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.867
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.862
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.852
Cucsa.067590 Cucumis sativus Cucsa.067590 N 0.852
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.845
MDP0000256775 Malus x domestica MDP0000256775 N 0.843
MDP0000259773 Malus x domestica MDP0000259773 N 0.843
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.831
SB08G001980 Sorghum bicolor Sb08g001980 N 0.831
AT3G63450 Arabidopsis thaliana AT3G63450-TAIR-G N 0.820
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.819
SB05G001540 Sorghum bicolor Sb05g001540 N 0.807
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.805
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.805
cassava2293.valid.m1 Manihot esculenta cassava2293.valid.m1 N 0.803
ppa002383m Prunus persica ppa002383m N 0.800
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.788
MDP0000164538 Malus x domestica MDP0000164538 N 0.788
XM_002883237.1 Arabidopsis lyrata fgenesh2_kg.3__2330__AT3G21100.2 N 0.787
PDK_20s1515401g002 Phoenix dactylifera PDK_20s1515401g002 N 0.787
GSVIVG00030048001 Vitis vinifera GSVIVG00030048001 N 0.787
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.779
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.779
30169.m006472 Ricinus communis 30169.m006472 N 0.776
mgf002273m Mimulus guttatus mgf002273m N 0.776
mgf000973m Mimulus guttatus mgf000973m N 0.774
MDP0000214823 Malus x domestica MDP0000214823 N 0.770
e_gw1.43.473.1 Selaginella moellendorfii e_gw1.43.473.1 N 0.770
AT3G21100 Arabidopsis thaliana AT3G21100-TAIR-G N 0.770
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.770
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.770
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.770
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.767
PK18074.1 Cannabis sativa PK18074.1 N 0.765
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.750
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.747
PDK_20s1703901g001 Phoenix dactylifera PDK_20s1703901g001 N 0.738
XM_002891597.1 Arabidopsis lyrata fgenesh2_kg.1__4219__AT1G51520.1 N 0.738
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.735
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.723
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.723
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.723