CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mgf013141m
(
Mimulus guttatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
mgf013141m
T53721_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf013141m
RRM
286
346
DSTFREEDVSSYFSTFGPVQDVRIPYQPKRMFGFVTFVYPETVKHILAKGNPHFVCDSRVL
Links
Other
RRM
family RBPs
Other
Mimulus guttatus
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK28383.1
Cannabis sativa
PK28383.1
N
0.885
AT3G63450
Arabidopsis thaliana
AT3G63450-TAIR-G
N
0.885
GRMZM2G003424
Zea mays
GRMZM2G003424
N
0.869
Cucsa.333940
Cucumis sativus
Cucsa.333940
N
0.869
Cucsa.067590
Cucumis sativus
Cucsa.067590
N
0.836
GRMZM2G044004
Zea mays
GRMZM2G044004
N
0.836
cassava2293.valid.m1
Manihot esculenta
cassava2293.valid.m1
N
0.803
XM_002883237.1
Arabidopsis lyrata
fgenesh2_kg.3__2330__AT3G21100.2
N
0.803
AT3G21100
Arabidopsis thaliana
AT3G21100-TAIR-G
N
0.770
MDP0000214823
Malus x domestica
MDP0000214823
N
0.754
GSVIVG00030048001
Vitis vinifera
GSVIVG00030048001
N
0.754
XM_002891597.1
Arabidopsis lyrata
fgenesh2_kg.1__4219__AT1G51520.1
N
0.738
e_gw1.43.473.1
Selaginella moellendorfii
e_gw1.43.473.1
N
0.721