CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.7.481.1
(
Mucor circinelloides
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.7.481.1
T50109_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.7.481.1
RRM
4
73
LVGNIPFELSEEQLIEVFKEVGPVASFRLLFDRETGRPKGYGFCEFFDAETAASAVRNLNDYEIGGRQLR
Links
Other
RRM
family RBPs
Other
Mucor circinelloides
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RO3G_14170
Rhizopus oryzae
RO3G_14170
N
0.958
estExt_fgeneshPB_pg.C_20804
Phycomyces blakesleeanus
estExt_fgeneshPB_pg.C_20804
N
0.831
SPPG_01899
Spizellomyces punctatus
SPPG_01899
N
0.775
e_gw.312.28.1
Nematostella vectensis
e_gw.312.28.1
N
0.732
UM02881
Ustilago maydis
UM02881
N
0.704
amel4_ncbi_hmm3649
Apis mellifera
amel4_ncbi_hmm3649
N
0.704
Cucsa.364140
Cucumis sativus
Cucsa.364140
N
0.704
nasonia_NCBI_hmm235054
Nasonia vitripennis
nasonia_NCBI_hmm235054
N
0.704
PK22244.1
Cannabis sativa
PK22244.1
N
0.704
ppa004010m
Prunus persica
ppa004010m
N
0.704
Glyma10g36350.1
Glycine max
Glyma10g36350.1
N
0.704
Glyma20g31220.1
Glycine max
Glyma20g31220.1
N
0.704
BGIBMGA006476
Bombyx mori
BGIBMGA006476
N
0.704
LjSGA_018671.1
Lotus japonicus
LjSGA_018671.1
N
0.704
ENSOANG00000004208
Ornithorhynchus anatinus
ENSOANG00000004208
N
0.700
MDP0000208337
Malus x domestica
MDP0000208337
N
0.700