CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gwW.23.55.1
(
Chlamydomonas reinhardtii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gwW.23.55.1
T50319_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gwW.23.55.1
RRM
15
40
IYVGGLPPTATEQSISSFFSHALAAI
e_gwW.23.55.1
RRM
45
90
AGPGNAVVNVYINREKNFAFVELRTVEETSNSMALDGIMFEGVSVR
e_gwW.23.55.1
RRM
130
200
IFVGGLPYYLTEDQCRELLGSFGAIKSFDLVKDRDTGNSKGYGFVVYQDTSVTDIACAGLNGLKMGDRTLT
Links
Other
RRM
family RBPs
Other
Chlamydomonas reinhardtii
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29646.m001075
Ricinus communis
29646.m001075
N
0.762
PK22404.1
Cannabis sativa
PK22404.1
N
0.741
ATU2AF65A
Arabidopsis thaliana
AT4G36690-TAIR-G
N
0.741
mgf002992m
Mimulus guttatus
mgf002992m
N
0.734
GSVIVG00007437001
Vitis vinifera
GSVIVG00007437001
N
0.720
BRADI4G12260
Brachypodium distachyon
BRADI4G12260
N
0.720
Medtr3g013160
Medicago truncatula
Medtr3g013160
N
0.713
GRMZM2G057450
Zea mays
GRMZM2G057450
N
0.713
LOC_Os11g41820
Oryza sativa
LOC_Os11g41820
N
0.706