ATU2AF65A (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT4G36690-TAIR-G T32793_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT4G36690.1-P RRM 241 267
AT4G36690.1-P RRM 272 316
AT4G36690.1-P RRM 361 431
AT4G36690.1-P RRM 495 557
AT4G36690.2-P RRM 241 267
AT4G36690.2-P RRM 272 316
AT4G36690.2-P RRM 361 431
AT4G36690.3-P RRM 241 267
AT4G36690.3-P RRM 272 316
AT4G36690.3-P RRM 361 431

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.985
29646.m001075 Ricinus communis 29646.m001075 N 0.937
PK22404.1 Cannabis sativa PK22404.1 N 0.930
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.923
mgf002992m Mimulus guttatus mgf002992m N 0.909
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.895
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.895
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.888
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.888
MDP0000194332 Malus x domestica MDP0000194332 N 0.883
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.883
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.883
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.879
MDP0000306572 Malus x domestica MDP0000306572 N 0.879
Sb05g025260 Sorghum bicolor Sb05g025260 N 0.874
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.874
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.874
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.869
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.869
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.869
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.869
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.869
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.867
chr3.CM0129.190.nd Lotus japonicus chr3.CM0129.190.nd N 0.867
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.864
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.859
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.859
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.850
mgf007385m Mimulus guttatus mgf007385m N 0.845
mgf004253m Mimulus guttatus mgf004253m N 0.845
mgf010551m Mimulus guttatus mgf010551m N 0.840
SB05G026786 Sorghum bicolor Sb05g026786 N 0.839
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.835
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.830
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.825
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.825
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.825
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.822
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.821
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.821
GSVIVG00007437001 Vitis vinifera GSVIVG00007437001 N 0.818
SB05G026740 Sorghum bicolor Sb05g026740 N 0.816
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.763
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.756
ppa006486m Prunus persica ppa006486m N 0.748
e_gwW.23.55.1 Chlamydomonas reinhardtii e_gwW.23.55.1 N 0.741
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.738
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.733
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.728
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.728
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.723
MDP0000288579 Malus x domestica MDP0000288579 N 0.723
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.718
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.709
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.704