GRMZM2G057450 (Zea mays)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GRMZM2G057450 T54054_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G057450_P01 RRM 207 232
GRMZM2G057450_P01 RRM 238 282
GRMZM2G057450_P01 RRM 327 397
GRMZM2G057450_P01 RRM 461 523
GRMZM2G057450_P02 RRM 207 232
GRMZM2G057450_P02 RRM 238 282
GRMZM2G057450_P02 RRM 327 397
GRMZM2G057450_P02 RRM 482 520
GRMZM2G057450_P03 RRM 35 60
GRMZM2G057450_P03 RRM 67 110
GRMZM2G057450_P03 RRM 155 225
GRMZM2G057450_P03 RRM 289 351
GRMZM2G057450_P04 RRM 32 57
GRMZM2G057450_P04 RRM 64 107
GRMZM2G057450_P04 RRM 152 222
GRMZM2G057450_P04 RRM 286 348
GRMZM2G057450_P05 RRM 1 56
GRMZM2G057450_P06 RRM 207 232
GRMZM2G057450_P06 RRM 238 282
GRMZM2G057450_P06 RRM 327 397

Links

Other RRM family RBPs
Other Zea mays RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.986
SB05G026740 Sorghum bicolor Sb05g026740 N 0.985
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.965
Sb05g025260 Sorghum bicolor Sb05g025260 N 0.944
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.944
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.941
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.932
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.932
SB05G026786 Sorghum bicolor Sb05g026786 N 0.930
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.930
mgf002992m Mimulus guttatus mgf002992m N 0.923
29646.m001075 Ricinus communis 29646.m001075 N 0.923
PK22404.1 Cannabis sativa PK22404.1 N 0.915
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.901
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.895
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.888
chr3.CM0129.190.nd Lotus japonicus chr3.CM0129.190.nd N 0.866
MDP0000194332 Malus x domestica MDP0000194332 N 0.850
MDP0000306572 Malus x domestica MDP0000306572 N 0.845
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.845
mgf004253m Mimulus guttatus mgf004253m N 0.839
mgf007385m Mimulus guttatus mgf007385m N 0.839
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.838
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.833
GSVIVG00007437001 Vitis vinifera GSVIVG00007437001 N 0.831
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.830
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.830
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.830
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.830
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.829
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.829
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.824
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.820
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.820
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.820
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.820
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.820
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.820
mgf010551m Mimulus guttatus mgf010551m N 0.820
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.816
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.799
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.797
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.797
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.772
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.772
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.757
ppa006486m Prunus persica ppa006486m N 0.756
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.755
MDP0000288579 Malus x domestica MDP0000288579 N 0.755
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.754
SB05G026783 Sorghum bicolor Sb05g026783 N 0.734
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.732
mgf009246m Mimulus guttatus mgf009246m N 0.716
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.714
e_gwW.23.55.1 Chlamydomonas reinhardtii e_gwW.23.55.1 N 0.713