BRADI4G12260 (Brachypodium distachyon)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BRADI4G12260 T33282_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI4G12260.1 RRM 243 268
BRADI4G12260.1 RRM 274 318
BRADI4G12260.1 RRM 363 433
BRADI4G12260.1 RRM 498 560
BRADI4G12260.2 RRM 243 268
BRADI4G12260.2 RRM 274 318
BRADI4G12260.2 RRM 363 433
BRADI4G12260.3 RRM 243 268
BRADI4G12260.3 RRM 274 318
BRADI4G12260.3 RRM 363 433

Links

Other RRM family RBPs
Other Brachypodium distachyon RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.986
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.979
Sb05g025260 Sorghum bicolor Sb05g025260 N 0.958
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.958
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.944
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.932
29646.m001075 Ricinus communis 29646.m001075 N 0.930
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.927
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.927
PK22404.1 Cannabis sativa PK22404.1 N 0.923
SB05G026786 Sorghum bicolor Sb05g026786 N 0.923
mgf002992m Mimulus guttatus mgf002992m N 0.915
SB05G026740 Sorghum bicolor Sb05g026740 N 0.907
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.902
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.895
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.894
chr3.CM0129.190.nd Lotus japonicus chr3.CM0129.190.nd N 0.873
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.859
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.859
MDP0000194332 Malus x domestica MDP0000194332 N 0.859
MDP0000306572 Malus x domestica MDP0000306572 N 0.854
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.854
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.854
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.854
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.854
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.854
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.850
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.850
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.849
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.844
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.840
mgf004253m Mimulus guttatus mgf004253m N 0.839
mgf007385m Mimulus guttatus mgf007385m N 0.839
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.835
GSVIVG00007437001 Vitis vinifera GSVIVG00007437001 N 0.831
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.829
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.829
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.829
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.821
mgf010551m Mimulus guttatus mgf010551m N 0.815
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.808
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.807
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.780
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.772
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.767
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.754
ppa006486m Prunus persica ppa006486m N 0.748
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.748
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.741
MDP0000288579 Malus x domestica MDP0000288579 N 0.741
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.732
mgf009246m Mimulus guttatus mgf009246m N 0.732
SB05G026783 Sorghum bicolor Sb05g026783 N 0.720
e_gwW.23.55.1 Chlamydomonas reinhardtii e_gwW.23.55.1 N 0.720
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.704