CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_170171
(
Neurospora tetrasperma
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1.C_170171
T51208_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_170171
RRM
192
262
MYLGRIPHGFYEHEIRAYFGQFGEITRLRVVRNKKTGASRHRAFVEFADAEVADIAARTMDKYLLFGHILT
Links
Other
RRM
family RBPs
Other
Neurospora tetrasperma
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_100354
Neurospora discreta
estExt_Genewise1Plus.C_100354
N
1.000
NCU08518
Neurospora crassa
NCU08518
N
1.000
gw1.7.2291.1
Myceliophthora thermophila
gw1.7.2291.1
N
0.930
estExt_Genewise1Plus.C_61440
Thielavia terrestris
estExt_Genewise1Plus.C_61440
N
0.930
CHGG_10382
Chaetomium globosum
CHGG_10382
N
0.930
Pa_3_7140
Podospora anserina
Pa_3_7140
N
0.915
e_gw1.11.592.1
Nectria haematococca
e_gw1.11.592.1
N
0.704
GSTUMT00006382001
Tuber melanosporum
GSTUMT00006382001
N
0.704
ACLA_045660
Aspergillus clavatus
CADACLAG00004652
N
0.704
FGSG_04392
Fusarium graminearum
FGSG_04392
N
0.704