CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1Plus.C_61440
(
Thielavia terrestris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1Plus.C_61440
T51490_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_61440
RRM
170
240
MYLGRIPHGFYEHELRSYFGQFGEITRLRLVRNKKTGASRHRAFIEFADAEVADIAARTMDKYLLFGHILQ
Links
Other
RRM
family RBPs
Other
Thielavia terrestris
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.7.2291.1
Myceliophthora thermophila
gw1.7.2291.1
N
0.958
estExt_Genewise1.C_170171
Neurospora tetrasperma
estExt_Genewise1.C_170171
N
0.930
NCU08518
Neurospora crassa
NCU08518
N
0.930
estExt_Genewise1Plus.C_100354
Neurospora discreta
estExt_Genewise1Plus.C_100354
N
0.930
CHGG_10382
Chaetomium globosum
CHGG_10382
N
0.930
Pa_3_7140
Podospora anserina
Pa_3_7140
N
0.901
GSTUMT00006382001
Tuber melanosporum
GSTUMT00006382001
N
0.746
VDBG_05329
Verticillium albo atrum
VDBG_05329
N
0.718
RO3G_08088
Rhizopus oryzae
RO3G_08088
N
0.718
VDAG_06981
Verticillium dahliae
VDAG_06981
N
0.718
e_gw1.11.592.1
Nectria haematococca
e_gw1.11.592.1
N
0.704
FGSG_04392
Fusarium graminearum
FGSG_04392
N
0.704
YALI0F14245g
Yarrowia lipolytica
YALI0F14245g
N
0.704
fgenesh1_pg.C_scaffold_1000567
Sporobolomyces roseus
fgenesh1_pg.C_scaffold_1000567
N
0.704