fgenesh1_kg.1_#_222_#_2209_1_CCWO_CCWP_EXTA (Myceliophthora thermophila)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_kg.1_#_222_#_2209_1_CCWO_CCWP_EXTA T51736_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_kg.1_#_222_#_2209_1_CCWO_CCWP_EXTA RRM 217 287

Links

Other RRM family RBPs
Other Myceliophthora thermophila RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1Plus.C_11394 Thielavia terrestris estExt_Genewise1Plus.C_11394 N 0.958
CHGG_04600 Chaetomium globosum CHGG_04600 N 0.944
estExt_Genewise1.C_150133 Neurospora tetrasperma estExt_Genewise1.C_150133 N 0.930
estExt_fgenesh3_kg.C_30075 Neurospora discreta estExt_fgenesh3_kg.C_30075 N 0.930
NCU08046 Neurospora crassa NCU08046 N 0.930
Pa_6_2610 Podospora anserina Pa_6_2610 N 0.915
MGG_07109 Magnaporthe oryzae MGG_07109 N 0.915
FVEG_06043 Fusarium verticillioides FVEG_06043 N 0.887
FOXG_08630 Fusarium oxysporum FOXG_08630 N 0.887
GLRG_08326 Colletotrichum graminicola GLRG_08326 N 0.887
estExt_Genewise1.C_32423 Cryphonectria parasitica estExt_Genewise1.C_32423 N 0.887
FGSG_05065 Fusarium graminearum FGSG_05065 N 0.873
VDAG_00435 Verticillium dahliae VDAG_00435 N 0.873
VDBG_00824 Verticillium albo atrum VDBG_00824 N 0.873
estExt_fgenesh1_pg.C_sca_18_chr2_1_00570 Nectria haematococca estExt_fgenesh1_pg.C_sca_18_chr2_1_00570 N 0.873
estExt_fgenesh1_kg.C_20030 Trichoderma atroviride estExt_fgenesh1_kg.C_20030 N 0.859
estExt_GeneWisePlus.C_20435 Trichoderma reesei estExt_GeneWisePlus.C_20435 N 0.859
BC1G_11662 Botrytis cinerea BC1G_11662 N 0.859
SS1G_09745 Sclerotinia sclerotiorum SS1G_09745 N 0.859
estExt_Genewise1Plus.C_11766 Trichoderma virens estExt_Genewise1Plus.C_11766 N 0.859
GSTUMT00000237001 Tuber melanosporum GSTUMT00000237001 N 0.845
MGYG_08099 Microsporum gypseum MGYG_08099 N 0.845
MCYG_04562 Microsporum canis MCYG_04562 N 0.831
PMAA_087020 Penicillium marneffei PMAA_087020 N 0.831
e_gw1.23.134.1 Cochliobolus heterostrophus C5 e_gw1.23.134.1 N 0.817
ANIA_10765 Aspergillus nidulans CADANIAG00007002 N 0.817
SNOG_12667 Stagonospora nodorum SNOG_12667 N 0.817
PTRG_11278 Pyrenophora tritici repentis PTRG_11278 N 0.817
PABG_02041 Paracoccidioides brasiliensis PABG_02041 N 0.817
BDBG_06989 Blastomyces dermatitidis BDBG_06989 N 0.817
HCAG_08183 Histoplasma capsulatum HCAG_08183 N 0.817
EAT79965.2 Phaeosphaeria nodorum EAT79965.2 N 0.817
AB01496.1 Alternaria brassicicola AB01496.1 N 0.817
NFIA_085320 Neosartorya fischeri CADNFIAG00007580 N 0.803
ATEG_04425 Aspergillus terreus CADATEAG00007866 N 0.803
An16g05260 Aspergillus niger CADANGAG00012995 N 0.803
AO090011000648 Aspergillus oryzae CADAORAG00005372 N 0.803
AFUA_2G09870 Aspergillus fumigatus CADAFUAG00004789 N 0.803
AFLA_044710 Aspergillus flavus CADAFLAG00005798 N 0.803
Pc22g19890 Penicillium chrysogenum Pc22g19890 N 0.789
fgenesh1_pm.00168_#_326 Aspergillus carbonarius fgenesh1_pm.00168_#_326 N 0.789
CPSG_09863 Coccidioides posadasii CPSG_09863 N 0.789
CIMG_07824 Coccidioides immitis CIMG_07824 N 0.789
ACLA_068950 Aspergillus clavatus CADACLAG00006993 N 0.789
fgenesh1_pg.C_scaffold_7000150 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_7000150 N 0.789
UREG_02154 Uncinocarpus reesii UREG_02154 N 0.789
TEQG_08157 Trichophyton equinum TEQG_08157 N 0.761
estExt_fgenesh1_pm.C_chr_50176 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_50176 N 0.761
TERG_03155 Trichophyton rubrum TERG_03155 N 0.761
TESG_02700 Trichophyton tonsurans TESG_02700 N 0.761
ARB_05170 Arthroderma benhamiae ARB_05170 N 0.746
TRV_03582 Trichophyton verrucosum TRV_03582 N 0.746