fgenesh1_pg.C_scaffold_8000502 (Trichoderma virens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.C_scaffold_8000502 T51953_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCU08034
M186_0.6 		Neurospora crassa WGCACA RNAcompete
Ray et al.(2013)
RNCMPT00209 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_8000502 RRM 6 77
fgenesh1_pg.C_scaffold_8000502 RRM 167 232

Links

Other RRM family RBPs
Other Trichoderma virens RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh5_pg.C_20604 Trichoderma reesei estExt_fgenesh5_pg.C_20604 I 0.899
estExt_fgenesh1_pg.C_sca_20_chr6_4_00002 Nectria haematococca estExt_fgenesh1_pg.C_sca_20_chr6_4_00002 I 0.790
FVEG_10477 Fusarium verticillioides FVEG_10477 N 0.754
FGSG_04286 Fusarium graminearum FGSG_04286 N 0.746
estExt_Genewise1Plus.C_11381 Myceliophthora thermophila estExt_Genewise1Plus.C_11381 I 0.739
GLRG_08280 Colletotrichum graminicola GLRG_08280 I 0.725
CHGG_04587 Chaetomium globosum CHGG_04587 I 0.717
estExt_Genewise1Plus.C_11424 Thielavia terrestris estExt_Genewise1Plus.C_11424 I 0.717
MGG_07085 Magnaporthe oryzae MGG_07085 I 0.703
scaffold_15-snap.81.1 Neurospora tetrasperma scaffold_15-snap.81.1 I 0.703
VDAG_10424 Verticillium dahliae VDAG_10424 I 0.703
NCU08034 Neurospora crassa NCU08034 D 0.703