scaffold_15-snap.81.1 (Neurospora tetrasperma)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_15-snap.81.1 T53953_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCU08034
M186_0.6 		Neurospora crassa WGCACA RNAcompete
Ray et al.(2013)
RNCMPT00209 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_15-snap.81.1 RRM 12 83
scaffold_15-snap.81.1 RRM 174 239

Links

Other RRM family RBPs
Other Neurospora tetrasperma RBPs

13 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCU08034 Neurospora crassa NCU08034 D 1.000
Pa_6_2170 Podospora anserina Pa_6_2170 I 0.906
estExt_Genewise1Plus.C_11381 Myceliophthora thermophila estExt_Genewise1Plus.C_11381 I 0.877
estExt_Genewise1Plus.C_11424 Thielavia terrestris estExt_Genewise1Plus.C_11424 I 0.877
CHGG_04587 Chaetomium globosum CHGG_04587 I 0.870
MGG_07085 Magnaporthe oryzae MGG_07085 I 0.761
GLRG_08280 Colletotrichum graminicola GLRG_08280 I 0.754
e_gw1.3.979.1 Cryphonectria parasitica e_gw1.3.979.1 I 0.741
VDAG_10424 Verticillium dahliae VDAG_10424 I 0.725
estExt_fgenesh1_pg.C_sca_20_chr6_4_00002 Nectria haematococca estExt_fgenesh1_pg.C_sca_20_chr6_4_00002 I 0.717
estExt_fgenesh5_pg.C_20604 Trichoderma reesei estExt_fgenesh5_pg.C_20604 I 0.710
BDBG_07806 Blastomyces dermatitidis BDBG_07806 I 0.710
fgenesh1_pg.C_scaffold_8000502 Trichoderma virens fgenesh1_pg.C_scaffold_8000502 I 0.703