fgenesh2_pg.scaffold_196000039 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pg.scaffold_196000039 T52229_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_196000039 RRM 37 106

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM25 Ornithorhynchus anatinus ENSOANG00000001056 N 0.814
RBM25 Oryctolagus cuniculus ENSOCUG00000013737 N 0.814
RBM25 Ochotona princeps ENSOPRG00000016744 N 0.814
RBM25 Oryzias latipes ENSORLG00000011874 N 0.814
Rbm25 Mus musculus ENSMUSG00000010608 N 0.814
RBM25 Monodelphis domestica ENSMODG00000006820 N 0.814
RBM25 Loxodonta africana ENSLAFG00000001074 N 0.814
ENSMGAG00000011708 Meleagris gallopavo ENSMGAG00000011708 N 0.814
RBM25 Myotis lucifugus ENSMLUG00000015434 N 0.814
RBM25 Macaca mulatta ENSMMUG00000002332 N 0.814
RBM25 Procavia capensis ENSPCAG00000006226 N 0.814
RBM25 Pan troglodytes ENSPTRG00000006509 N 0.814
RBM25 Tetraodon nigroviridis ENSTNIG00000012222 N 0.814
RBM25 Takifugu rubripes ENSTRUG00000017964 N 0.814
RBM25 Vicugna pacos ENSVPAG00000009052 N 0.814
rbm25 Xenopus tropicalis ENSXETG00000021857 N 0.814
RBM25 Spermophilus tridecemlineatus ENSSTOG00000011117 N 0.814
ENSSSCG00000002339 Sus scrofa ENSSSCG00000002339 N 0.814
RGD1565486 Rattus norvegicus ENSRNOG00000002871 N 0.814
RBM25 Sorex araneus ENSSARG00000002327 N 0.814
ENSSSCG00000002336 Sus scrofa ENSSSCG00000002336 N 0.814
RBM25 Gallus gallus ENSGALG00000009332 N 0.814
RBM25 Gorilla gorilla ENSGGOG00000002415 N 0.814
AAH45216 Xenopus laevis AAH45216 N 0.814
ENSDARG00000078091 Danio rerio ENSDARG00000078091 N 0.814
Q3ZCK6_BOVIN Bos taurus ENSBTAG00000017177 N 0.814
RBM25 Cavia porcellus ENSCPOG00000002479 N 0.814
LOC100400201 Callithrix jacchus ENSCJAG00000014441 N 0.814
RBM25 Canis familiaris ENSCAFG00000016809 N 0.814
AAI06691 Xenopus laevis AAI06691 N 0.814
RBM25 Dasypus novemcinctus ENSDNOG00000004959 N 0.814
AAI24905 Xenopus laevis AAI24905 N 0.814
Ame_R008393 Ailuropoda melanoleuca Ame_R008393 N 0.814
RBM25 Homo sapiens ENSG00000119707 N 0.814
RBM25 Echinops telfairi ENSETEG00000015941 N 0.814
LOC100055577 Equus caballus ENSECAG00000013395 N 0.814
RBM25 Erinaceus europaeus ENSEEUG00000007350 N 0.814
RBM25 Anolis carolinensis ENSACAG00000016239 N 0.800
rbm25 Danio rerio ENSDARG00000006395 N 0.800
RBM25 Gasterosteus aculeatus ENSGACG00000012400 N 0.800
RBM25 Taeniopygia guttata ENSTGUG00000011246 N 0.800
RBM25 Oryzias latipes ENSORLG00000009958 N 0.800
RBM25 Takifugu rubripes ENSTRUG00000003076 N 0.800
ENSCJAG00000033489 Callithrix jacchus ENSCJAG00000033489 N 0.786
fgeneshTA2_pg.C_scaffold_22000023 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_22000023 N 0.786
ENSCING00000007913 Ciona intestinalis ENSCING00000007913 N 0.786
ENSCSAVG00000010097 Ciona savignyi ENSCSAVG00000010097 N 0.786
RBM25 Gasterosteus aculeatus ENSGACG00000013536 N 0.771
XP_002157477.1 Hydra magnipapillata XP_002157477.1 N 0.729
Aqu1.225523 Amphimedon queenslandica Aqu1.225523 N 0.714