CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.8.745.1
(
Mycosphaerella fijiensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.8.745.1
T53396_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.8.745.1
RRM
26
95
IMVGNLAGEVTDDSLAKAFAQYGVSKARVVRDKRTTKSKGFGFVEFEEGELGFKAAREMTGKYIGSHPVT
Links
Other
RRM
family RBPs
Other
Mycosphaerella fijiensis
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.6.1506.1
Mycosphaerella graminicola
gw1.6.1506.1
N
0.800
AO090003000122
Aspergillus oryzae
CADAORAG00000798
I
0.746
fgenesh1_pm.00118_#_519
Aspergillus carbonarius
fgenesh1_pm.00118_#_519
I
0.746
ATEG_05852
Aspergillus terreus
CADATEAG00002953
I
0.746
AFLA_036830
Aspergillus flavus
CADAFLAG00003057
I
0.746
PABG_01757
Paracoccidioides brasiliensis
PABG_01757
I
0.732
CADANIAG00004740
Aspergillus nidulans
CADANIAG00004740
D
0.732
An11g02050
Aspergillus niger
CADANGAG00008541
I
0.732
GSTUMT00010522001
Tuber melanosporum
GSTUMT00010522001
I
0.732
UREG_01087
Uncinocarpus reesii
UREG_01087
I
0.718
ACLA_082600
Aspergillus clavatus
CADACLAG00007506
I
0.718
TRV_04123
Trichophyton verrucosum
TRV_04123
I
0.718
TESG_08545
Trichophyton tonsurans
TESG_08545
I
0.718
CIMG_01152
Coccidioides immitis
CIMG_01152
I
0.718
BDBG_03382
Blastomyces dermatitidis
BDBG_03382
I
0.718
ARB_07912
Arthroderma benhamiae
ARB_07912
I
0.718
CPSG_02060
Coccidioides posadasii
CPSG_02060
I
0.718
HCAG_05883
Histoplasma capsulatum
HCAG_05883
I
0.718
TERG_02769
Trichophyton rubrum
TERG_02769
I
0.718
TEQG_04534
Trichophyton equinum
TEQG_04534
I
0.718
NFIA_053730
Neosartorya fischeri
CADNFIAG00004585
I
0.704
MCYG_08625
Microsporum canis
MCYG_08625
I
0.704
AFUA_6G08040
Aspergillus fumigatus
CADAFUAG00002290
I
0.704