CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPSG_02060
(
Coccidioides posadasii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CPSG_02060
T29048_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.915
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPSG_02060T0
RRM
118
188
LFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAAREMQGKYIGSHPVL
Links
Other
RRM
family RBPs
Other
Coccidioides posadasii
RBPs
50 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CIMG_01152
Coccidioides immitis
CIMG_01152
I
1.000
PABG_01757
Paracoccidioides brasiliensis
PABG_01757
I
0.986
HCAG_05883
Histoplasma capsulatum
HCAG_05883
I
0.986
BDBG_03382
Blastomyces dermatitidis
BDBG_03382
I
0.986
TEQG_04534
Trichophyton equinum
TEQG_04534
I
0.972
UREG_01087
Uncinocarpus reesii
UREG_01087
I
0.972
TESG_08545
Trichophyton tonsurans
TESG_08545
I
0.972
TRV_04123
Trichophyton verrucosum
TRV_04123
I
0.972
TERG_02769
Trichophyton rubrum
TERG_02769
I
0.972
ARB_07912
Arthroderma benhamiae
ARB_07912
I
0.972
MCYG_08625
Microsporum canis
MCYG_08625
I
0.958
An11g02050
Aspergillus niger
CADANGAG00008541
I
0.930
CADANIAG00004740
Aspergillus nidulans
CADANIAG00004740
D
0.915
fgenesh1_pm.00118_#_519
Aspergillus carbonarius
fgenesh1_pm.00118_#_519
I
0.915
GSTUMT00010522001
Tuber melanosporum
GSTUMT00010522001
I
0.915
AFLA_036830
Aspergillus flavus
CADAFLAG00003057
I
0.915
AO090003000122
Aspergillus oryzae
CADAORAG00000798
I
0.915
ATEG_05852
Aspergillus terreus
CADATEAG00002953
I
0.901
AFUA_6G08040
Aspergillus fumigatus
CADAFUAG00002290
I
0.887
NFIA_053730
Neosartorya fischeri
CADNFIAG00004585
I
0.887
PMAA_072470
Penicillium marneffei
PMAA_072470
I
0.873
ACLA_082600
Aspergillus clavatus
CADACLAG00007506
I
0.873
BC1G_02746
Botrytis cinerea
BC1G_02746
I
0.831
SS1G_09871
Sclerotinia sclerotiorum
SS1G_09871
I
0.831
estExt_Genewise1.C_320079
Cochliobolus heterostrophus C5
estExt_Genewise1.C_320079
I
0.803
Pc12g10950
Penicillium chrysogenum
Pc12g10950
I
0.803
AB09441.1
Alternaria brassicicola
AB09441.1
I
0.803
PTRG_02274
Pyrenophora tritici repentis
PTRG_02274
I
0.803
fgenesh1_pg.sca_1_chr1_3_0000264
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000264
I
0.789
FOXG_00280
Fusarium oxysporum
FOXG_00280
I
0.789
GLRG_01583
Colletotrichum graminicola
GLRG_01583
I
0.789
EAT76715.1
Phaeosphaeria nodorum
EAT76715.1
I
0.789
estExt_Genewise1Plus.C_13260
Thielavia terrestris
estExt_Genewise1Plus.C_13260
I
0.789
FVEG_01237
Fusarium verticillioides
FVEG_01237
I
0.789
FGSG_11902
Fusarium graminearum
FGSG_11902
I
0.789
e_gw1.1.2591.1
Trichoderma atroviride
e_gw1.1.2591.1
I
0.789
e_gw1.3.1071.1
Trichoderma reesei
e_gw1.3.1071.1
I
0.789
SNOG_15877
Stagonospora nodorum
SNOG_15877
I
0.789
estExt_fgenesh1_pg.C_20919
Myceliophthora thermophila
estExt_fgenesh1_pg.C_20919
I
0.789
gw1.6.1720.1
Cryphonectria parasitica
gw1.6.1720.1
I
0.775
gw1.33.170.1
Trichoderma virens
gw1.33.170.1
I
0.775
estExt_fgenesh3_kg.C_70295
Neurospora discreta
estExt_fgenesh3_kg.C_70295
I
0.761
NCU03099
Neurospora crassa
NCU03099
I
0.761
MGG_01274
Magnaporthe oryzae
MGG_01274
I
0.761
estExt_Genewise1Plus.C_50687
Neurospora tetrasperma
estExt_Genewise1Plus.C_50687
I
0.761
Pa_1_11770
Podospora anserina
Pa_1_11770
I
0.761
VDAG_04412
Verticillium dahliae
VDAG_04412
I
0.746
CHGG_00842
Chaetomium globosum
CHGG_00842
I
0.746
gw1.8.745.1
Mycosphaerella fijiensis
gw1.8.745.1
N
0.718
gw1.6.1506.1
Mycosphaerella graminicola
gw1.6.1506.1
N
0.704