XP_002167334.1 (Hydra magnipapillata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_002167334.1 T59125_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.803
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.775
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_002167334.1 RRM 164 234

Links

Other RRM family RBPs
Other Hydra magnipapillata RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.803
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.803
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.803
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.803
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.803
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.803
RBM42 Oryzias latipes ENSORLG00000003387 I 0.803
A2VDB3 Xenopus laevis A2VDB3 I 0.789
rbm42 Danio rerio ENSDARG00000039910 I 0.789
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.789
AAI29698 Xenopus laevis AAI29698 I 0.789
RBM42 Procavia capensis ENSPCAG00000013053 I 0.775
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.775
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.775
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.775
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.775
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.775
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.775
Rbm42 Mus musculus ENSMUSG00000036733 I 0.775
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.775
RBM42 Sus scrofa ENSSSCG00000002905 I 0.775
RBM42 Sorex araneus ENSSARG00000010724 I 0.775
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.775
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.775
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.775
LOC100051102 Equus caballus ENSECAG00000018215 I 0.775
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.775
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.775
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.775
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.775
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.775
RBM42 Homo sapiens ENSG00000126254 D 0.775
RBM42 Canis familiaris ENSCAFG00000006925 I 0.775
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.775
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.775
RBM42 Microcebus murinus ENSMICG00000009880 I 0.775
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.775
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.775
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.761
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.761
PTSG_04228 Salpingoeca rosetta PTSG_04228 I 0.746
AAI29577 Xenopus laevis AAI29577 I 0.746
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.732
GP3.076550 Batrachochytrium dendrobatidis GP3.076550 I 0.732
PHUM106890 Pediculus humanus PHUM106890 I 0.732
RBM42 Loxodonta africana ENSLAFG00000014993 N 0.718
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.718
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.718
pasa_Sanger_mRNA18521 Chlamydomonas reinhardtii pasa_Sanger_mRNA18521 N 0.718
SNAPOd2T00026674001 Oikopleura dioica SNAPOd2T00026674001 N 0.712
Ppa-tag-262 Pristionchus pacificus PPA14507 I 0.704
ENSMEUG00000003054 Macropus eugenii ENSMEUG00000003054 I 0.704