CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G031846
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G031846
T54024_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G031846_P01
RRM
88
158
LYVTGLSTRVTEDDLEKFFSKEGKVKNCHVVLDPRTKESRGFAFVTMDTLEGARRSIKYLHRTVLEGRLVT
GRMZM2G031846_P02
RRM
88
158
LYVTGLSTRVTEDDLEKFFSKEGKVKNCHVVLDPRTKESRGFAFVTMDTLEGARRSIKYLHRTVLEGRLVT
GRMZM2G031846_P03
RRM
88
158
LYVTGLSTRVTEDDLEKFFSKEGKVKNCHVVLDPRTKESRGFAFVTMDTLEGARRSIKYLHRTVLEGRLVT
GRMZM2G031846_P04
RRM
88
158
LYVTGLSTRVTEDDLEKFFSKEGKVKNCHVVLDPRTKESRGFAFVTMDTLEGARRSIKYLHRTVLEGRLVT
GRMZM2G031846_P05
RRM
83
153
LYVTGLSTRVTEDDLEKFFSKEGKVKNCHVVLDPRTKESRGFAFVTMDTLEGARRSIKYLHRTVLEGRLVT
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB07G019390
Sorghum bicolor
Sb07g019390
N
0.944
LOC_Os08g29650
Oryza sativa
LOC_Os08g29650
N
0.887
BGIOSIBSE038661
Oryza indica
BGIOSIBSE038661
N
0.887
BRADI1G29180
Brachypodium distachyon
BRADI1G29180
N
0.845
30190.m011248
Ricinus communis
30190.m011248
N
0.761
cassava28819.valid.m1
Manihot esculenta
cassava28819.valid.m1
N
0.761
ppa011480m
Prunus persica
ppa011480m
N
0.761
cassava28821.valid.m1
Manihot esculenta
cassava28821.valid.m1
N
0.761
PK05232.1
Cannabis sativa
PK05232.1
N
0.761
cassava28820.valid.m1
Manihot esculenta
cassava28820.valid.m1
N
0.761
MDP0000140238
Malus x domestica
MDP0000140238
N
0.746
PDK_20s1416111g002
Phoenix dactylifera
PDK_20s1416111g002
N
0.746
B9GWT8_POPTR
Populus trichocarpa
POPTR_0003s13030
N
0.732
GSVIVG00019390001
Vitis vinifera
GSVIVG00019390001
N
0.718
mg018590m
Mimulus guttatus
mg018590m
N
0.704
PDK_20s1771821g002
Phoenix dactylifera
PDK_20s1771821g002
N
0.704