CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G064612
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G064612
T54065_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G064612_P01
RRM
4
66
VFCGNFDHDTRQYDLERLFSKYGPISRIDMKLGYAFIYFEDERDAEDAIRRLDNVSFGYNRRR
GRMZM2G064612_P01
RRM
95
158
LFVINFDPIRTKVQDIEKHFEPYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVT
GRMZM2G064612_P02
RRM
4
66
VFCGNFDHDTRQYDLERLFSKYGPISRIDMKLGYAFIYFEDERDAEDAIRRLDNVSFGYNRRR
GRMZM2G064612_P02
RRM
95
158
LFVINFDPIRTKVQDIEKHFEPYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVT
GRMZM2G064612_P03
RRM
4
66
VFCGNFDHDTRQYDLERLFSKYGPISRIDMKLGYAFIYFEDERDAEDAIRRLDNVSFGYNRRR
GRMZM2G064612_P03
RRM
95
158
LFVINFDPIRTKVQDIEKHFEPYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVT
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB01G049590
Sorghum bicolor
Sb01g049590
N
0.953
BRADI1G77520
Brachypodium distachyon
BRADI1G77520
N
0.835
Cucsa.259460
Cucumis sativus
Cucsa.259460
N
0.724
XM_002882032.1
Arabidopsis lyrata
fgenesh2_kg.4__2884__AT2G46610.1
N
0.717
RS31
Arabidopsis thaliana
AT3G61860-TAIR-G
N
0.717
XM_002878371.1
Arabidopsis lyrata
fgenesh2_kg.5__2682__AT3G61860.1
N
0.717