XM_002882032.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.4__2884__AT2G46610.1 T44539_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.4__2884__AT2G46610.1 RRM 4 64
fgenesh2_kg.4__2884__AT2G46610.1 RRM 97 160

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RS31a Arabidopsis thaliana AT2G46610-TAIR-G N 0.920
Cucsa.259460 Cucumis sativus Cucsa.259460 N 0.888
XM_002878371.1 Arabidopsis lyrata fgenesh2_kg.5__2682__AT3G61860.1 N 0.848
RS31 Arabidopsis thaliana AT3G61860-TAIR-G N 0.840
cassava43624.valid.m1 Manihot esculenta cassava43624.valid.m1 N 0.832
PK15848.1 Cannabis sativa PK15848.1 N 0.832
cassava43625.valid.m1 Manihot esculenta cassava43625.valid.m1 N 0.832
mgf011632m Mimulus guttatus mgf011632m N 0.825
ppa008137m Prunus persica ppa008137m N 0.824
B9GR47_POPTR Populus trichocarpa POPTR_0002s17560 N 0.816
29742.m001371 Ricinus communis 29742.m001371 N 0.816
MDP0000387508 Malus x domestica MDP0000387508 N 0.808
MDP0000263938 Malus x domestica MDP0000263938 N 0.808
Glyma16g02500.1 Glycine max Glyma16g02500.1 N 0.794
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.794
B9I911_POPTR Populus trichocarpa POPTR_0014s09730 N 0.792
Medtr8g029490 Medicago truncatula Medtr8g029490 N 0.778
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.732
BRADI5G01430 Brachypodium distachyon BRADI5G01430 N 0.728
SB01G049590 Sorghum bicolor Sb01g049590 N 0.722
LOC_Os04g02870 Oryza sativa LOC_Os04g02870 N 0.720
BGIOSIBCE013939 Oryza indica BGIOSIBCE013939 N 0.720
GRMZM2G064612 Zea mays GRMZM2G064612 N 0.717
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.709
XM_002869624.1 Arabidopsis lyrata fgenesh2_kg.7__1711__AT4G25500.1 N 0.709
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.709
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.701
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.701
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.701
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.701