Cucsa.259460 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.259460 T49614_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.259460.1 RRM 4 64
Cucsa.259460.1 RRM 95 158
Cucsa.259460.2 RRM 17 48
Cucsa.259460.2 RRM 79 142
Cucsa.259460.3 RRM 14 45
Cucsa.259460.3 RRM 76 139
Cucsa.259460.4 RRM 14 45
Cucsa.259460.4 RRM 76 139
Cucsa.259460.5 RRM 14 45
Cucsa.259460.5 RRM 76 139
Cucsa.259460.6 RRM 3 40
Cucsa.259460.6 RRM 71 134

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf003788m Mimulus guttatus mgf003788m N 0.918
cassava43624.valid.m1 Manihot esculenta cassava43624.valid.m1 N 0.904
cassava43625.valid.m1 Manihot esculenta cassava43625.valid.m1 N 0.904
PK15848.1 Cannabis sativa PK15848.1 N 0.904
mgf011632m Mimulus guttatus mgf011632m N 0.897
XM_002882032.1 Arabidopsis lyrata fgenesh2_kg.4__2884__AT2G46610.1 N 0.888
29742.m001371 Ricinus communis 29742.m001371 N 0.888
GSVIVG00027193001 Vitis vinifera GSVIVG00027193001 N 0.873
ppa008137m Prunus persica ppa008137m N 0.872
B9I911_POPTR Populus trichocarpa POPTR_0014s09730 N 0.864
B9GR47_POPTR Populus trichocarpa POPTR_0002s17560 N 0.864
Glyma16g02500.1 Glycine max Glyma16g02500.1 N 0.857
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.857
MDP0000387508 Malus x domestica MDP0000387508 N 0.848
MDP0000263938 Malus x domestica MDP0000263938 N 0.848
Medtr8g029490 Medicago truncatula Medtr8g029490 N 0.841
XM_002878371.1 Arabidopsis lyrata fgenesh2_kg.5__2682__AT3G61860.1 N 0.840
RS31 Arabidopsis thaliana AT3G61860-TAIR-G N 0.832
RS31a Arabidopsis thaliana AT2G46610-TAIR-G N 0.816
LOC_Os04g02870 Oryza sativa LOC_Os04g02870 N 0.776
BGIOSIBCE013939 Oryza indica BGIOSIBCE013939 N 0.776
BRADI5G01430 Brachypodium distachyon BRADI5G01430 N 0.768
PDK_20s1735941g001 Phoenix dactylifera PDK_20s1735941g001 N 0.760
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.748
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.748
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.748
SB01G049590 Sorghum bicolor Sb01g049590 N 0.738
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.732
SB06G001100 Sorghum bicolor Sb06g001100 N 0.728
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.724
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.724
GRMZM2G064612 Zea mays GRMZM2G064612 N 0.724
GRMZM2G021223 Zea mays GRMZM2G021223 N 0.720
GRMZM2G052166 Zea mays GRMZM2G052166 N 0.720
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.717
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.717
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.717
PDK_20s1321561g003 Phoenix dactylifera PDK_20s1321561g003 N 0.713
ppa005993m Prunus persica ppa005993m N 0.709
PK24775.1 Cannabis sativa PK24775.1 N 0.709
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.705
cassava31734.valid.m1 Manihot esculenta cassava31734.valid.m1 N 0.704
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.701
Glyma10g38400.1 Glycine max Glyma10g38400.1 N 0.701
Glyma20g29460.1 Glycine max Glyma20g29460.1 N 0.701
mgf011722m Mimulus guttatus mgf011722m N 0.701
MDP0000288452 Malus x domestica MDP0000288452 N 0.701