CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Skud_Contig1428.4
(
Saccharomyces kudriavzevii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Skud_Contig1428.4
T54923_0.6
SGD (2003-Oct-3)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Skud_Contig1428.4
RRM
93
163
IYVSRLPHGFHEKELSKYFAQFGDLREVRLARNKKTGNSRHYGFLEFVNKEDAFVAQESMNNYLLMGHLLQ
Links
Other
RRM
family RBPs
Other
Saccharomyces kudriavzevii
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
18449_YNL110C
Saccharomyces mikatae
18449_YNL110C
N
0.986
NOP15
Saccharomyces cerevisiae
YNL110C
N
0.958
18916_YNL110C
Saccharomyces paradoxus
18916_YNL110C
N
0.958
Kwal_8458
Kluyveromyces waltii
Kwal_8458
N
0.887
KLTH0D09262g
Kluyveromyces thermotolerans
KLTH0D09262g
N
0.873
A7TR62_VANPO
Vanderwaltozyma polyspora
A7TR62_VANPO
N
0.831
Scas_Contig666.11
Saccharomyces castellii
Scas_Contig666.11
N
0.817
AFL224W
Ashbya gossypii
AFL224W
N
0.817
ZYRO0B09790g
Zygosaccharomyces rouxii
ZYRO0B09790g
N
0.817
KLLA0F23650g
Kluyveromyces lactis
KLLA0F23650g
N
0.803
CAGL0L03806g
Candida glabrata
CAGL0L03806g
N
0.803
SAKL0E10604g
Lachancea kluyveri
SAKL0E10604g
N
0.803