CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PGTG_00327
(
Puccinia graminis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PGTG_00327
T29972_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGTT_00327
RRM
19
86
LFVKNLNYKTKGEDLYDLFGKYGAIRQIRIGTDPKTRGTAFVVYEDILDAKNAFDHLNGFHLQERYLV
Links
Other
RRM
family RBPs
Other
Puccinia graminis
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
EuGene.00070081
Melampsora laricis populina
EuGene.00070081
N
0.971
PTTG_08563
Puccinia triticina
PTTG_08563
N
0.957
fgenesh1_pg.C_scaffold_2000586
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_2000586
N
0.794
fgenesh3_pg.17__64
Postia placenta
fgenesh3_pg.17__64
N
0.794
estExt_fgenesh2_pm.C_40077
Heterobasidion annosum
estExt_fgenesh2_pm.C_40077
N
0.794
fgenesh1_pm.C_scaffold_1000427
Schizophyllum commune
fgenesh1_pm.C_scaffold_1000427
N
0.794
estExt_GeneWisePlus_human.C_40675
Laccaria bicolor
estExt_GeneWisePlus_human.C_40675
N
0.794
genemark.5060_g
Pleurotus ostreatus
genemark.5060_g
N
0.779
CC1G_00173
Coprinopsis cinerea
CC1G_00173
N
0.779
estExt_fgenesh2_kg.C_40528
Agaricus bisporus
estExt_fgenesh2_kg.C_40528
N
0.779
e_gw1.6.621.1
Sporobolomyces roseus
e_gw1.6.621.1
N
0.765
estExt_fgenesh2_kg.C_41881
Serpula lacrymans
estExt_fgenesh2_kg.C_41881
N
0.765
PHUM617060
Pediculus humanus
PHUM617060
N
0.721
ISCW024082
Ixodes scapularis
ISCW024082
N
0.721
EDP43472.1
Malassezia globosa
EDP43472.1
N
0.721
Minc01156
Meloidogyne incognita
Minc01156
N
0.706