CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDK_20s1332281g005
(
Phoenix dactylifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PDK_20s1332281g005
T58073_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1332281g005
RRM
57
126
IFVGGLSDNITEDEFKNYFKEFGTITDVVVMYDSATHRPRGFGFITFDSEEAVENVMQKSFHELNGKYVE
Links
Other
RRM
family RBPs
Other
Phoenix dactylifera
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.757
PDK_20s1768781g001
Phoenix dactylifera
PDK_20s1768781g001
N
0.743
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.729
Glyma17g35080.1
Glycine max
Glyma17g35080.1
N
0.720