CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDK_20s1768781g001
(
Phoenix dactylifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PDK_20s1768781g001
T58230_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1768781g001
RRM
40
109
IFVGGLASSVTEADFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEDAVDKVLVKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Phoenix dactylifera
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.914
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.871
PDK_20s1332281g005
Phoenix dactylifera
PDK_20s1332281g005
N
0.743
cassava24410.valid.m1
Manihot esculenta
cassava24410.valid.m1
N
0.714
PK18013.1
Cannabis sativa
PK18013.1
N
0.714
cassava24411.valid.m1
Manihot esculenta
cassava24411.valid.m1
N
0.714