Medtr2g030270 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr2g030270 T54449_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr2g030270.1 RRM 47 115
Medtr2g030270.1 RRM 149 218
Medtr2g030270.2 RRM 1 39
Medtr2g030270.2 RRM 73 142
Medtr2g030270.3 RRM 38 107
Medtr2g030270.4 RRM 1 40

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.957
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.935
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.935
30048.m000319 Ricinus communis 30048.m000319 N 0.928
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.921
PDK_20s1768781g001 Phoenix dactylifera PDK_20s1768781g001 N 0.914
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.906
PK13457.1 Cannabis sativa PK13457.1 N 0.899
mgf009385m Mimulus guttatus mgf009385m N 0.899
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.899
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.892
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.892
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.892
ppa005119m Prunus persica ppa005119m N 0.885
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.885
ppa005132m Prunus persica ppa005132m N 0.885
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.885
PK25912.1 Cannabis sativa PK25912.1 N 0.878
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.878
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.878
MDP0000320618 Malus x domestica MDP0000320618 N 0.878
MDP0000907782 Malus x domestica MDP0000907782 N 0.878
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.878
mgf012147m Mimulus guttatus mgf012147m N 0.878
29608.m000212 Ricinus communis 29608.m000212 N 0.871
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.871
MDP0000204698 Malus x domestica MDP0000204698 N 0.871
ppa004834m Prunus persica ppa004834m N 0.863
ppa005122m Prunus persica ppa005122m N 0.863
MDP0000609551 Malus x domestica MDP0000609551 N 0.863
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.863
MDP0000188788 Malus x domestica MDP0000188788 N 0.863
MDP0000642684 Malus x domestica MDP0000642684 N 0.863
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.858
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.857
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.856
mgf004139m Mimulus guttatus mgf004139m N 0.856
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.856
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.856
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.856
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.850
PDK_20s1691521g001 Phoenix dactylifera PDK_20s1691521g001 N 0.850
mgf009486m Mimulus guttatus mgf009486m N 0.850
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.850
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.849
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.849
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.843
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.842
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.842
27613.m000635 Ricinus communis 27613.m000635 N 0.842
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.842
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.835
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.835
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.835
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.827
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.827
PDK_20s1830981g001 Phoenix dactylifera PDK_20s1830981g001 N 0.825
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.820
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.820
SB02G005670 Sorghum bicolor Sb02g005670 N 0.813
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.813
SB02G005620 Sorghum bicolor Sb02g005620 N 0.813
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.806
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.806
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.806
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.806
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.799
SB02G037690 Sorghum bicolor Sb02g037690 N 0.799
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.799
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.799
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.791
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.791
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.784
PDK_20s1332281g005 Phoenix dactylifera PDK_20s1332281g005 N 0.757
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.752
29637.m000760 Ricinus communis 29637.m000760 N 0.750
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.748
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.734
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.727
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.727
mgf015744m Mimulus guttatus mgf015744m N 0.725
mgf012866m Mimulus guttatus mgf012866m N 0.725
SB05G025410 Sorghum bicolor Sb05g025410 N 0.712
cassava24410.valid.m1 Manihot esculenta cassava24410.valid.m1 N 0.700
cassava24411.valid.m1 Manihot esculenta cassava24411.valid.m1 N 0.700