AT5G47620 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT5G47620-TAIR-G T32838_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G47620.1-P RRM 8 75
AT5G47620.1-P RRM 108 177
AT5G47620.2-P RRM 8 75
AT5G47620.2-P RRM 108 177
AT5G47620.3-P RRM 48 117

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.978
PDK_20s1768781g001 Phoenix dactylifera PDK_20s1768781g001 N 0.871
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.857
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.842
30048.m000319 Ricinus communis 30048.m000319 N 0.842
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.842
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.842
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.827
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.827
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.813
PK13457.1 Cannabis sativa PK13457.1 N 0.813
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.813
PK25912.1 Cannabis sativa PK25912.1 N 0.813
ppa005119m Prunus persica ppa005119m N 0.806
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.806
29608.m000212 Ricinus communis 29608.m000212 N 0.799
SB02G005670 Sorghum bicolor Sb02g005670 N 0.799
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.799
MDP0000320618 Malus x domestica MDP0000320618 N 0.799
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.799
ppa005132m Prunus persica ppa005132m N 0.799
SB02G005620 Sorghum bicolor Sb02g005620 N 0.799
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.793
MDP0000188788 Malus x domestica MDP0000188788 N 0.791
MDP0000609551 Malus x domestica MDP0000609551 N 0.791
MDP0000907782 Malus x domestica MDP0000907782 N 0.791
MDP0000204698 Malus x domestica MDP0000204698 N 0.791
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.791
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.791
mgf009385m Mimulus guttatus mgf009385m N 0.791
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.791
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.791
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.786
mgf004139m Mimulus guttatus mgf004139m N 0.784
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.784
mgf012147m Mimulus guttatus mgf012147m N 0.784
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.784
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.784
MDP0000642684 Malus x domestica MDP0000642684 N 0.784
ppa005122m Prunus persica ppa005122m N 0.784
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.784
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.784
ppa004834m Prunus persica ppa004834m N 0.784
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.784
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.784
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.780
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.777
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.777
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.777
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.777
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.777
SB02G037690 Sorghum bicolor Sb02g037690 N 0.777
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.777
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.777
27613.m000635 Ricinus communis 27613.m000635 N 0.777
mgf009486m Mimulus guttatus mgf009486m N 0.771
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.770
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.770
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.770
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.764
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.763
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.763
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.763
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.755
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.755
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.755
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.755
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.755
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.755
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.748
PDK_20s1332281g005 Phoenix dactylifera PDK_20s1332281g005 N 0.729
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.727
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.719
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.719