CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH45023
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAH45023
T59465_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH45023
RRM
14
83
LFIGGLNVQTTEEGLRQHFETYGQLTDCVVVINPQTKRSRCFGFVTYSSAAEADAAVEAAPHVVDGNNVE
AAH45023
RRM
105
174
LFVGGLKEEVGESDLLEHFSQFGAVERVEIIADKLSGKKRGFGFVYFASHDSADKAAVVKFHSVNGHRVE
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH41277
Xenopus laevis
AAH41277
N
0.957
AAI06306
Xenopus laevis
AAI06306
N
0.957
AAH71067
Xenopus laevis
AAH71067
N
0.957
hnrnpa0
Xenopus tropicalis
ENSXETG00000003833
N
0.943
Hnrnpa0
Mus musculus
ENSMUSG00000007836
N
0.800
ENSMEUG00000013675
Macropus eugenii
ENSMEUG00000013675
N
0.800
HNRNPA0
Meleagris gallopavo
ENSMGAG00000007915
N
0.793
HNRNPA0
Monodelphis domestica
ENSMODG00000014720
N
0.793
HNRNPA0
Gallus gallus
ENSGALG00000006160
N
0.793
HNRNPA0
Cavia porcellus
ENSCPOG00000026092
N
0.793
LOC100399260
Callithrix jacchus
ENSCJAG00000006112
N
0.793
HNRNPA0
Oryctolagus cuniculus
ENSOCUG00000005703
N
0.793
ENSPPYG00000015814
Pongo pygmaeus
ENSPPYG00000015814
N
0.786
Ame_R010989
Ailuropoda melanoleuca
Ame_R010989
N
0.786
HNRNPA0
Tursiops truncatus
ENSTTRG00000000499
N
0.786
HNRNPA0
Pan troglodytes
ENSPTRG00000017273
N
0.786
HNRNPA0
Sus scrofa
ENSSSCG00000014322
N
0.786
HNRNPA0
Macaca mulatta
ENSMMUG00000011929
N
0.786
HNRNPA0
Homo sapiens
ENSG00000177733
N
0.786
A1L532_BOVIN
Bos taurus
ENSBTAG00000016929
N
0.786
HNRNPA0
Canis familiaris
ENSCAFG00000001132
N
0.786
HNRNPA0
Gorilla gorilla
ENSGGOG00000023303
N
0.786
HNRNPA0
Loxodonta africana
ENSLAFG00000028290
N
0.786
Hnrnpa0
Rattus norvegicus
ENSRNOG00000039876
N
0.771
HNRNPA0
Ornithorhynchus anatinus
ENSOANG00000012169
N
0.750
HNRNPA0
Taeniopygia guttata
ENSTGUG00000001186
N
0.736
ENSDARG00000029260
Danio rerio
ENSDARG00000029260
N
0.700